Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids
Color visualization of the DNA of diverse living beings can help in the exploration of the issue of chromatic differentiation of functional mappings of the nucleotide composition of DNA molecules. By “chromatic differentiation”, we mean the coloring of these mappings. Algorithms for coloring genetic...
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| Format: | Article |
| Language: | English |
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MDPI AG
2023-04-01
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| Series: | Symmetry |
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| Online Access: | https://www.mdpi.com/2073-8994/15/4/942 |
| _version_ | 1797603351837278208 |
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| author | Ivan V. Stepanyan Mihail Y. Lednev |
| author_facet | Ivan V. Stepanyan Mihail Y. Lednev |
| author_sort | Ivan V. Stepanyan |
| collection | DOAJ |
| description | Color visualization of the DNA of diverse living beings can help in the exploration of the issue of chromatic differentiation of functional mappings of the nucleotide composition of DNA molecules. By “chromatic differentiation”, we mean the coloring of these mappings. Algorithms for coloring genetic representations improve the perception of complex genetic information using color. Methodologically, to build the chromatic differentiation of functional mappings of the nucleotide composition of DNA, we employed the system of nucleotide Walsh functions and the Chaos Game Representation (CGR) algorithm. The authors compared these two approaches and proposed a modified CGR algorithm. The work presents various algorithms of chromatic differentiation based on the nucleotide Walsh functions at a specific location of the fragment in the nucleotide chain and on the frequencies of those fragments. The results of the analysis provide examples of chromatic differentiation in a variety of parametric spaces. The paper describes various approaches to coloring and video animation of DNA molecules in their chromatically differentiated spans of physicochemical parameters. |
| first_indexed | 2024-03-11T04:28:56Z |
| format | Article |
| id | doaj.art-4530012481bf40bbbca2e4e0d42d9409 |
| institution | Directory Open Access Journal |
| issn | 2073-8994 |
| language | English |
| last_indexed | 2024-03-11T04:28:56Z |
| publishDate | 2023-04-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Symmetry |
| spelling | doaj.art-4530012481bf40bbbca2e4e0d42d94092023-11-17T21:34:55ZengMDPI AGSymmetry2073-89942023-04-0115494210.3390/sym15040942Chromatic Differentiation of Functional Mappings of the Composition of Nucleic AcidsIvan V. Stepanyan0Mihail Y. Lednev1Mechanical Engineering Research Institute of the Russian Academy of Sciences (IMASH RAN), 4, M. Kharitonyevskiy Pereulok, Moscow 101990, RussiaMechanical Engineering Research Institute of the Russian Academy of Sciences (IMASH RAN), 4, M. Kharitonyevskiy Pereulok, Moscow 101990, RussiaColor visualization of the DNA of diverse living beings can help in the exploration of the issue of chromatic differentiation of functional mappings of the nucleotide composition of DNA molecules. By “chromatic differentiation”, we mean the coloring of these mappings. Algorithms for coloring genetic representations improve the perception of complex genetic information using color. Methodologically, to build the chromatic differentiation of functional mappings of the nucleotide composition of DNA, we employed the system of nucleotide Walsh functions and the Chaos Game Representation (CGR) algorithm. The authors compared these two approaches and proposed a modified CGR algorithm. The work presents various algorithms of chromatic differentiation based on the nucleotide Walsh functions at a specific location of the fragment in the nucleotide chain and on the frequencies of those fragments. The results of the analysis provide examples of chromatic differentiation in a variety of parametric spaces. The paper describes various approaches to coloring and video animation of DNA molecules in their chromatically differentiated spans of physicochemical parameters.https://www.mdpi.com/2073-8994/15/4/942chromatic differentiationcoloringnucleotide compositionnucleic acidsDNARNA |
| spellingShingle | Ivan V. Stepanyan Mihail Y. Lednev Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids Symmetry chromatic differentiation coloring nucleotide composition nucleic acids DNA RNA |
| title | Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids |
| title_full | Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids |
| title_fullStr | Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids |
| title_full_unstemmed | Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids |
| title_short | Chromatic Differentiation of Functional Mappings of the Composition of Nucleic Acids |
| title_sort | chromatic differentiation of functional mappings of the composition of nucleic acids |
| topic | chromatic differentiation coloring nucleotide composition nucleic acids DNA RNA |
| url | https://www.mdpi.com/2073-8994/15/4/942 |
| work_keys_str_mv | AT ivanvstepanyan chromaticdifferentiationoffunctionalmappingsofthecompositionofnucleicacids AT mihailylednev chromaticdifferentiationoffunctionalmappingsofthecompositionofnucleicacids |