Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain
Salmonella Gallinarum (SG) is a host-restricted enterobacteria and the causative agent of fowl typhoid in poultry. Here, we report the complete genomes of two strains belonging to this serotype. SA68 is a field strain isolated from the livers of dead hen carcasses of a commercial layer farm presenti...
| Main Authors: | , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2023-04-01
|
| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S235234092300077X |
| _version_ | 1797867586216525824 |
|---|---|
| author | Ruy D. Chacón Jorge L. Chacón Manuel Ramírez Carmen L. Rodríguez Cueva Wilma Ursula Quispe-Rojas César Bryan Reyes-Moreno Claudete S. Astolfi-Ferreira Antonio J. Piantino Ferreira |
| author_facet | Ruy D. Chacón Jorge L. Chacón Manuel Ramírez Carmen L. Rodríguez Cueva Wilma Ursula Quispe-Rojas César Bryan Reyes-Moreno Claudete S. Astolfi-Ferreira Antonio J. Piantino Ferreira |
| author_sort | Ruy D. Chacón |
| collection | DOAJ |
| description | Salmonella Gallinarum (SG) is a host-restricted enterobacteria and the causative agent of fowl typhoid in poultry. Here, we report the complete genomes of two strains belonging to this serotype. SA68 is a field strain isolated from the livers of dead hen carcasses of a commercial layer farm presenting high mortality located in São Paulo city, Brazil, in 1990. Strain 9R corresponds to a live attenuated SG commercial vaccine. DNA was extracted from pure cultures and subjected to whole genome sequencing (WGS) using the Ion Torrent PGM System. The assemblies reached lengths of 4,657,435 (SA68) and 4,657,471 (9R) base pairs. Complete genomes were deposited in GenBank under the accession numbers CP110192 (SA68) and CP110508 (9R). Both genomes were analyzed and compared in terms of molecular typing, antibiotic resistance genes, virulence genes, Salmonella pathogenic islands (SPIs), insertion sequences and prophages. The data obtained show many similarities in the genetic content, with the exception of the SPI-12 and CS54 pathogenic islands, which are exclusive to the field strain. The information generated will help to understand the virulence differences of field and vaccinal SG strains and can be used to perform evolutionary and epidemiologic studies. |
| first_indexed | 2024-04-09T23:43:33Z |
| format | Article |
| id | doaj.art-46340bfc7e54460883e8fac3472a1383 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-04-09T23:43:33Z |
| publishDate | 2023-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-46340bfc7e54460883e8fac3472a13832023-03-18T04:41:44ZengElsevierData in Brief2352-34092023-04-0147108959Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strainRuy D. Chacón0Jorge L. Chacón1Manuel Ramírez2Carmen L. Rodríguez Cueva3Wilma Ursula Quispe-Rojas4César Bryan Reyes-Moreno5Claudete S. Astolfi-Ferreira6Antonio J. Piantino Ferreira7Department of Pathology, School of Veterinary Medicine, University of São Paulo, Av. Prof. Orlando M. Paiva, 87, São Paulo 05508-270, Brazil; Inter-Units Program in Biotechnology, University of São Paulo, Avenida Prof. Lineu Prestes, 2415, São Paulo 05508-900, BrazilCeva Animal Health, R. Manoel Joaquim Filho, 303, São Paulo 13148-115, BrazilÁrea de Análisis Bioinformático, Centro de Investigaciones Tecnológicas, Biomédicas y Medioambientales, Jirón José Santos Chocano, 199, Bellavista 07006, PerúLaboratory of Biology and Molecular Genetics, Faculty of Veterinary Medicine, Universidad Nacional Mayor de San Marcos, Lima 15021, PeruLaboratory of Molecular Microbiology and Biotechnology, Faculty of Biological Sciences, Universidad Nacional Mayor de San Marcos, Lima 15081, PeruLaboratory of Molecular Microbiology and Biotechnology, Faculty of Biological Sciences, Universidad Nacional Mayor de San Marcos, Lima 15081, PeruDepartment of Pathology, School of Veterinary Medicine, University of São Paulo, Av. Prof. Orlando M. Paiva, 87, São Paulo 05508-270, BrazilDepartment of Pathology, School of Veterinary Medicine, University of São Paulo, Av. Prof. Orlando M. Paiva, 87, São Paulo 05508-270, Brazil; Corresponding author.Salmonella Gallinarum (SG) is a host-restricted enterobacteria and the causative agent of fowl typhoid in poultry. Here, we report the complete genomes of two strains belonging to this serotype. SA68 is a field strain isolated from the livers of dead hen carcasses of a commercial layer farm presenting high mortality located in São Paulo city, Brazil, in 1990. Strain 9R corresponds to a live attenuated SG commercial vaccine. DNA was extracted from pure cultures and subjected to whole genome sequencing (WGS) using the Ion Torrent PGM System. The assemblies reached lengths of 4,657,435 (SA68) and 4,657,471 (9R) base pairs. Complete genomes were deposited in GenBank under the accession numbers CP110192 (SA68) and CP110508 (9R). Both genomes were analyzed and compared in terms of molecular typing, antibiotic resistance genes, virulence genes, Salmonella pathogenic islands (SPIs), insertion sequences and prophages. The data obtained show many similarities in the genetic content, with the exception of the SPI-12 and CS54 pathogenic islands, which are exclusive to the field strain. The information generated will help to understand the virulence differences of field and vaccinal SG strains and can be used to perform evolutionary and epidemiologic studies.http://www.sciencedirect.com/science/article/pii/S235234092300077XFowl typhoidMultilocus sequence typingSerotypePathogenicity islandVirulence factorAntimicrobial Resistance gene |
| spellingShingle | Ruy D. Chacón Jorge L. Chacón Manuel Ramírez Carmen L. Rodríguez Cueva Wilma Ursula Quispe-Rojas César Bryan Reyes-Moreno Claudete S. Astolfi-Ferreira Antonio J. Piantino Ferreira Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain Data in Brief Fowl typhoid Multilocus sequence typing Serotype Pathogenicity island Virulence factor Antimicrobial Resistance gene |
| title | Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain |
| title_full | Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain |
| title_fullStr | Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain |
| title_full_unstemmed | Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain |
| title_short | Complete genome sequence data of two Salmonella enterica subsp. enterica serovar Gallinarum: A 9R vaccine strain and a virulent Brazilian field strain |
| title_sort | complete genome sequence data of two salmonella enterica subsp enterica serovar gallinarum a 9r vaccine strain and a virulent brazilian field strain |
| topic | Fowl typhoid Multilocus sequence typing Serotype Pathogenicity island Virulence factor Antimicrobial Resistance gene |
| url | http://www.sciencedirect.com/science/article/pii/S235234092300077X |
| work_keys_str_mv | AT ruydchacon completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT jorgelchacon completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT manuelramirez completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT carmenlrodriguezcueva completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT wilmaursulaquisperojas completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT cesarbryanreyesmoreno completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT claudetesastolfiferreira completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain AT antoniojpiantinoferreira completegenomesequencedataoftwosalmonellaentericasubspentericaserovargallinaruma9rvaccinestrainandavirulentbrazilianfieldstrain |