Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida
Aeromonas salmonicida is an important pathogen that can infect a variety of marine and freshwater fish. There are five subspecies of Aeromonas salmonicida: A. salmonicida subsp. salmonicida, A. salmonicida subsp. smithia, A. salmonicida subsp. achromogenes, A. salmonicida subsp. masoucida, and A. sa...
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| Format: | Article |
| Language: | English |
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Science Press, PR China
2023-08-01
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| Series: | Progress in Fishery Sciences |
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| Online Access: | http://journal.yykxjz.cn/yykxjz/ch/reader/view_abstract.aspx?file_no=20220801001 |
| _version_ | 1797692114575818752 |
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| author | Jingjing LIU Guiyang LI Huaiyuan JIN Ye GAO Huilin WANG Jie LI |
| author_facet | Jingjing LIU Guiyang LI Huaiyuan JIN Ye GAO Huilin WANG Jie LI |
| author_sort | Jingjing LIU |
| collection | DOAJ |
| description | Aeromonas salmonicida is an important pathogen that can infect a variety of marine and freshwater fish. There are five subspecies of Aeromonas salmonicida: A. salmonicida subsp. salmonicida, A. salmonicida subsp. smithia, A. salmonicida subsp. achromogenes, A. salmonicida subsp. masoucida, and A. salmonicida subsp. pectinolytica. Traditionally, the detection of A. salmonicida has been based on 16S rRNA sequencing and physiological and biochemical characterization, but it is difficult to identify the subspecies using these methods. Outer membrane protein (A-layer protein, VapA), which is encoded by the vapA gene and regulated by the luxS gene, is an important secretion protein of A. salmonicida. It is involved in bacterial self-agglutination induction, macrophage phagocytosis resistance, and provides protection against chemicals such as antibiotics and disinfectants. In addition, the vapA gene is also an effective molecular marker for the identification of A. salmonicida subspecies, however, gene sequencing and phylogenetic analysis are required for subspecies determination. To establish an accurate and sensitive rapid detection of A. salmonicida subspecies, in this study we tried to establish a specific PCR method for A. salmonicida subsp. salmonicida and A. salmonicida subsp. masoucida identification. Based on genome analysis, the phoB and LOC111476736 genes were used as molecular markers for PCR amplification with specific primers designed according to the sequences in the GenBank database. The target gene was amplified using the genomic DNA of A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida, and the method was optimized to improve the efficiency and accuracy of distinguishing these two subspecies from other pathogens in aquaculture. First, the annealing temperature, primer concentration, dNTPs concentration, Mg2+ concentration, and enzyme dosage of the PCR system were optimized to improve the sensitivity of the detection method. The results showed that the primers could amplify the phoB gene fragment of 522 bp and the LOC111476736 gene fragment of 515 bp. The optimal annealing temperature of specific primers for A. salmonicida subsp. salmonicida was 64 ℃, and the optimal volume of 10 μmol/L primers, 2 mmol/L dNTPs, 25 mmol/L MgSO4, and 1 U/µL enzyme were 1.5 µL, 2.0 µL, 1.5 µL, and 0.5 μL (25 μL reaction system), respectively. The optimum annealing temperature of specific primers for A. salmonicida subsp. masoucida was 64 ℃, and the optimum volume of 10 µmol/L primers, 2 mmol/L dNTPs, 25 mmol/L MgSO4, and 1 U/µL enzyme were 0.75 µL, 1.00 µL, 1.50 µL, and 0.50 µL (25 μL reaction system), respectively. The sensitivity of the detection method was determined using a gradient diluted A. salmonicida subsp. salmonicida ATCC33658 bacterin as the template, and the target band could not be amplified when the bacterin concentration was lower than 12.8 CFU/reaction. The detection limit of A. salmonicida subsp. salmonicida based on the phoB gene sequence established in this study was 12.8 CFU/reaction. With DNA as the template, when the concentration of the DNA template was lower than 17.6 fg/reaction, the target band could not be amplified. Thus, the detection limit of specific primers based on the phoB gene sequence for A. salmonicida subsp. salmonicida was 17.6 fg/reaction. When the gradient dilution of A. salmonicida subsp. masoucida ATCC27013 bacterin was used as the template, the target band could not be amplified when the bacterin concentration was lower than 23.8 CFU/reaction. Thus, the detection limit of the method for A. salmonicida subsp. masoucida, based on the LOC111476736 gene sequence was 23.8 CFU/reaction. With DNA of ATCC27013 as the template, when the concentration of the DNA template was lower than 27.2 fg/reaction, the target band could not be amplified. Thus, in this study, the detection limit of DNA for A. salmonicida subsp. masoucida using specific primers designed according to the LOC111476736 gene sequence was 27.2 fg/reaction. The specificity of the detection method using specific primers based on the phoB and LOC111476736 genes was also determined in this study. Aquaculture pathogens or environmental bacteria, such as Vibrio anguillarum, Photobacterium damselae, Edwardsiella piscicida, Escherichia coli, Aeromonas hydrophila, Vibrio harveyi, Aeromonas encheleia, Streptococcus parauberis, Streptococcus iniae, Streptococcus dysgalactiae, and Bacillus subtilis, were used as templates for specificity testing. No specific products were found for any of the other pathogens tested. The specific PCR products could only be amplified from the bacterins of A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida. We also tested the application of detection methods using an experimentally infected turbot as a model. Turbot was infected with A. salmonicida subsp. salmonicida strain ASS20200608XZ11L or A. salmonicida subsp. masoucida strain ASM20160705RZ6S by intramuscular injection. All turbot died within 7 days post-infection, and the liver, spleen, and kidney of moribund fish were used as templates. The results showed that the established method could accurately detect A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida in the turbot, without nonspecific amplification in the tissues of the healthy turbot. In conclusion, we established a specific PCR method to detect two subspecies of A. salmonicida, and these methods could be used as effective tools for investigating the epidemiology of A. salmonicida. |
| first_indexed | 2024-03-12T02:23:01Z |
| format | Article |
| id | doaj.art-474abd4533ab424bb2dcc40523869632 |
| institution | Directory Open Access Journal |
| issn | 2095-9869 |
| language | English |
| last_indexed | 2024-03-12T02:23:01Z |
| publishDate | 2023-08-01 |
| publisher | Science Press, PR China |
| record_format | Article |
| series | Progress in Fishery Sciences |
| spelling | doaj.art-474abd4533ab424bb2dcc405238696322023-09-06T02:02:12ZengScience Press, PR ChinaProgress in Fishery Sciences2095-98692023-08-0144422323310.19663/j.issn2095-9869.2022080100120220801001Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucidaJingjing LIU0Guiyang LI1Huaiyuan JIN2Ye GAO3Huilin WANG4Jie LI5Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaYellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Laboratory for Marine Fisheries Science and Food Production Processes, Pilot National Laboratory for Marine Science and Technology (Qingdao), Key Laboratory of Maricultural Organism Disease Control, Ministry of Agriculture and Rural Affairs, Qingdao 266071, ChinaAeromonas salmonicida is an important pathogen that can infect a variety of marine and freshwater fish. There are five subspecies of Aeromonas salmonicida: A. salmonicida subsp. salmonicida, A. salmonicida subsp. smithia, A. salmonicida subsp. achromogenes, A. salmonicida subsp. masoucida, and A. salmonicida subsp. pectinolytica. Traditionally, the detection of A. salmonicida has been based on 16S rRNA sequencing and physiological and biochemical characterization, but it is difficult to identify the subspecies using these methods. Outer membrane protein (A-layer protein, VapA), which is encoded by the vapA gene and regulated by the luxS gene, is an important secretion protein of A. salmonicida. It is involved in bacterial self-agglutination induction, macrophage phagocytosis resistance, and provides protection against chemicals such as antibiotics and disinfectants. In addition, the vapA gene is also an effective molecular marker for the identification of A. salmonicida subspecies, however, gene sequencing and phylogenetic analysis are required for subspecies determination. To establish an accurate and sensitive rapid detection of A. salmonicida subspecies, in this study we tried to establish a specific PCR method for A. salmonicida subsp. salmonicida and A. salmonicida subsp. masoucida identification. Based on genome analysis, the phoB and LOC111476736 genes were used as molecular markers for PCR amplification with specific primers designed according to the sequences in the GenBank database. The target gene was amplified using the genomic DNA of A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida, and the method was optimized to improve the efficiency and accuracy of distinguishing these two subspecies from other pathogens in aquaculture. First, the annealing temperature, primer concentration, dNTPs concentration, Mg2+ concentration, and enzyme dosage of the PCR system were optimized to improve the sensitivity of the detection method. The results showed that the primers could amplify the phoB gene fragment of 522 bp and the LOC111476736 gene fragment of 515 bp. The optimal annealing temperature of specific primers for A. salmonicida subsp. salmonicida was 64 ℃, and the optimal volume of 10 μmol/L primers, 2 mmol/L dNTPs, 25 mmol/L MgSO4, and 1 U/µL enzyme were 1.5 µL, 2.0 µL, 1.5 µL, and 0.5 μL (25 μL reaction system), respectively. The optimum annealing temperature of specific primers for A. salmonicida subsp. masoucida was 64 ℃, and the optimum volume of 10 µmol/L primers, 2 mmol/L dNTPs, 25 mmol/L MgSO4, and 1 U/µL enzyme were 0.75 µL, 1.00 µL, 1.50 µL, and 0.50 µL (25 μL reaction system), respectively. The sensitivity of the detection method was determined using a gradient diluted A. salmonicida subsp. salmonicida ATCC33658 bacterin as the template, and the target band could not be amplified when the bacterin concentration was lower than 12.8 CFU/reaction. The detection limit of A. salmonicida subsp. salmonicida based on the phoB gene sequence established in this study was 12.8 CFU/reaction. With DNA as the template, when the concentration of the DNA template was lower than 17.6 fg/reaction, the target band could not be amplified. Thus, the detection limit of specific primers based on the phoB gene sequence for A. salmonicida subsp. salmonicida was 17.6 fg/reaction. When the gradient dilution of A. salmonicida subsp. masoucida ATCC27013 bacterin was used as the template, the target band could not be amplified when the bacterin concentration was lower than 23.8 CFU/reaction. Thus, the detection limit of the method for A. salmonicida subsp. masoucida, based on the LOC111476736 gene sequence was 23.8 CFU/reaction. With DNA of ATCC27013 as the template, when the concentration of the DNA template was lower than 27.2 fg/reaction, the target band could not be amplified. Thus, in this study, the detection limit of DNA for A. salmonicida subsp. masoucida using specific primers designed according to the LOC111476736 gene sequence was 27.2 fg/reaction. The specificity of the detection method using specific primers based on the phoB and LOC111476736 genes was also determined in this study. Aquaculture pathogens or environmental bacteria, such as Vibrio anguillarum, Photobacterium damselae, Edwardsiella piscicida, Escherichia coli, Aeromonas hydrophila, Vibrio harveyi, Aeromonas encheleia, Streptococcus parauberis, Streptococcus iniae, Streptococcus dysgalactiae, and Bacillus subtilis, were used as templates for specificity testing. No specific products were found for any of the other pathogens tested. The specific PCR products could only be amplified from the bacterins of A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida. We also tested the application of detection methods using an experimentally infected turbot as a model. Turbot was infected with A. salmonicida subsp. salmonicida strain ASS20200608XZ11L or A. salmonicida subsp. masoucida strain ASM20160705RZ6S by intramuscular injection. All turbot died within 7 days post-infection, and the liver, spleen, and kidney of moribund fish were used as templates. The results showed that the established method could accurately detect A. salmonicida subsp. salmonicida or A. salmonicida subsp. masoucida in the turbot, without nonspecific amplification in the tissues of the healthy turbot. In conclusion, we established a specific PCR method to detect two subspecies of A. salmonicida, and these methods could be used as effective tools for investigating the epidemiology of A. salmonicida.http://journal.yykxjz.cn/yykxjz/ch/reader/view_abstract.aspx?file_no=20220801001aeromonas salmonicida subsp. salmonicidaaeromonas salmonicida subsp. masoucidapcrdetection |
| spellingShingle | Jingjing LIU Guiyang LI Huaiyuan JIN Ye GAO Huilin WANG Jie LI Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida Progress in Fishery Sciences aeromonas salmonicida subsp. salmonicida aeromonas salmonicida subsp. masoucida pcr detection |
| title | Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida |
| title_full | Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida |
| title_fullStr | Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida |
| title_full_unstemmed | Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida |
| title_short | Development of a PCR Method to Detect the Aeromonas salmonicida subsp. salmonicida and Aeromonas salmonicida subsp. masoucida |
| title_sort | development of a pcr method to detect the aeromonas salmonicida subsp salmonicida and aeromonas salmonicida subsp masoucida |
| topic | aeromonas salmonicida subsp. salmonicida aeromonas salmonicida subsp. masoucida pcr detection |
| url | http://journal.yykxjz.cn/yykxjz/ch/reader/view_abstract.aspx?file_no=20220801001 |
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