Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome
Economic value development of peony is limited by the fuzzy genetic relationships. Phylogeny investigation, genomic resource conservation, and genome evolution could be elucidated by the chloroplast genome (cp) on account of the extremely conservative structure. Paeonia lactiflora ‘Lv He’, a new peo...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1749156 |
| _version_ | 1797639281949278208 |
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| author | Lili Guo Shuai Guo Gaixiu Liu Xiaogai Hou |
| author_facet | Lili Guo Shuai Guo Gaixiu Liu Xiaogai Hou |
| author_sort | Lili Guo |
| collection | DOAJ |
| description | Economic value development of peony is limited by the fuzzy genetic relationships. Phylogeny investigation, genomic resource conservation, and genome evolution could be elucidated by the chloroplast genome (cp) on account of the extremely conservative structure. Paeonia lactiflora ‘Lv He’, a new peony variety blooming with green flowers, possess excellent ornamental value. Molecular structure and phylogenetic analysis of the plastome of Paeonia lactiflora ‘Lv He’ was resolved in this study. The complete cp genome contained a typical quadripartite structure with a length of 152, 702 bp and an overall 38.4% GC content. The circular molecule of the genome was constituted of a large single-copy (LSC) region of 84,373 bp with 36.7% GC content, a small single-copy (SSC) region of 16,969 bp with 32.7% GC content, and a pair of inverted repeat (IRa and IRb) regions of 25,680 bp each with 43.1% GC content. The genome annotated 115 genes, containg 81 protein-coding genes, 30 transfer RNA (tRNA) genes, and 4 ribosomal RNA (rRNA) genes. Phylogenetic analysis revealed a sister taxonomical relationship to P. lactiflora and P. obovate. |
| first_indexed | 2024-03-11T13:14:33Z |
| format | Article |
| id | doaj.art-478a17c3b09a488db627abbd573788bb |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:33Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-478a17c3b09a488db627abbd573788bb2023-11-03T13:50:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521724172510.1080/23802359.2020.17491561749156Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genomeLili Guo0Shuai Guo1Gaixiu Liu2Xiaogai Hou3Henan University of Science and TechnologyHenan University of Science and TechnologyNational Peony Gene Bank of LuoyangHenan University of Science and TechnologyEconomic value development of peony is limited by the fuzzy genetic relationships. Phylogeny investigation, genomic resource conservation, and genome evolution could be elucidated by the chloroplast genome (cp) on account of the extremely conservative structure. Paeonia lactiflora ‘Lv He’, a new peony variety blooming with green flowers, possess excellent ornamental value. Molecular structure and phylogenetic analysis of the plastome of Paeonia lactiflora ‘Lv He’ was resolved in this study. The complete cp genome contained a typical quadripartite structure with a length of 152, 702 bp and an overall 38.4% GC content. The circular molecule of the genome was constituted of a large single-copy (LSC) region of 84,373 bp with 36.7% GC content, a small single-copy (SSC) region of 16,969 bp with 32.7% GC content, and a pair of inverted repeat (IRa and IRb) regions of 25,680 bp each with 43.1% GC content. The genome annotated 115 genes, containg 81 protein-coding genes, 30 transfer RNA (tRNA) genes, and 4 ribosomal RNA (rRNA) genes. Phylogenetic analysis revealed a sister taxonomical relationship to P. lactiflora and P. obovate.http://dx.doi.org/10.1080/23802359.2020.1749156paeonia lactiflora ‘lv he’chloroplast genomemolecular structurephylogenetic analysis |
| spellingShingle | Lili Guo Shuai Guo Gaixiu Liu Xiaogai Hou Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome Mitochondrial DNA. Part B. Resources paeonia lactiflora ‘lv he’ chloroplast genome molecular structure phylogenetic analysis |
| title | Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome |
| title_full | Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome |
| title_fullStr | Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome |
| title_full_unstemmed | Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome |
| title_short | Structure and phylogenetic analysis of Paeonia lactiflora ‘Lv He’ chloroplast genome |
| title_sort | structure and phylogenetic analysis of paeonia lactiflora lv he chloroplast genome |
| topic | paeonia lactiflora ‘lv he’ chloroplast genome molecular structure phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1749156 |
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