Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters
For systems biology, it is important to describe the kinetic and thermodynamic properties of enzyme-catalyzed reactions and reaction cascades quantitatively under conditions prevailing in the cytoplasm. While in part I kinetic models based on irreversible thermodynamics were tested, here in part II,...
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MDPI AG
2020-10-01
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| Series: | International Journal of Molecular Sciences |
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| Online Access: | https://www.mdpi.com/1422-0067/21/21/7921 |
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| author | Kristina Vogel Thorsten Greinert Monique Reichard Christoph Held Hauke Harms Thomas Maskow |
| author_facet | Kristina Vogel Thorsten Greinert Monique Reichard Christoph Held Hauke Harms Thomas Maskow |
| author_sort | Kristina Vogel |
| collection | DOAJ |
| description | For systems biology, it is important to describe the kinetic and thermodynamic properties of enzyme-catalyzed reactions and reaction cascades quantitatively under conditions prevailing in the cytoplasm. While in part I kinetic models based on irreversible thermodynamics were tested, here in part II, the influence of the presumably most important cytosolic factors was investigated using two glycolytic reactions (i.e., the phosphoglucose isomerase reaction (PGI) with a uni-uni-mechanism and the enolase reaction with an uni-bi-mechanism) as examples. Crowding by macromolecules was simulated using polyethylene glycol (PEG) and bovine serum albumin (BSA). The reactions were monitored calorimetrically and the equilibrium concentrations were evaluated using the equation of state ePC-SAFT. The pH and the crowding agents had the greatest influence on the reaction enthalpy change. Two kinetic models based on irreversible thermodynamics (i.e., single parameter flux-force and two-parameter Noor model) were applied to investigate the influence of cytosolic conditions. The flux-force model describes the influence of cytosolic conditions on reaction kinetics best. Concentrations of magnesium ions and crowding agents had the greatest influence, while temperature and pH-value had a medium influence on the kinetic parameters. With this contribution, we show that the interplay of thermodynamic modeling and calorimetric process monitoring allows a fast and reliable quantification of the influence of cytosolic conditions on kinetic and thermodynamic parameters. |
| first_indexed | 2024-03-10T15:20:37Z |
| format | Article |
| id | doaj.art-481ba804831a4659997abb61f7be6d74 |
| institution | Directory Open Access Journal |
| issn | 1661-6596 1422-0067 |
| language | English |
| last_indexed | 2024-03-10T15:20:37Z |
| publishDate | 2020-10-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | International Journal of Molecular Sciences |
| spelling | doaj.art-481ba804831a4659997abb61f7be6d742023-11-20T18:28:15ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672020-10-012121792110.3390/ijms21217921Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic ParametersKristina Vogel0Thorsten Greinert1Monique Reichard2Christoph Held3Hauke Harms4Thomas Maskow5UFZ - Helmholtz Centre for Environmental Research, Department Environmental Microbiology, Leipzig, Permoserstr. 15, D-04318 Leipzig, GermanyLaboratory of Thermodynamics, Department of Biochemical and Chemical Engineering, Technische Universitaet Dortmund, Emil-Figge-Str. 70, 44227 Dortmund, GermanyUFZ - Helmholtz Centre for Environmental Research, Department Environmental Microbiology, Leipzig, Permoserstr. 15, D-04318 Leipzig, GermanyLaboratory of Thermodynamics, Department of Biochemical and Chemical Engineering, Technische Universitaet Dortmund, Emil-Figge-Str. 70, 44227 Dortmund, GermanyUFZ - Helmholtz Centre for Environmental Research, Department Environmental Microbiology, Leipzig, Permoserstr. 15, D-04318 Leipzig, GermanyUFZ - Helmholtz Centre for Environmental Research, Department Environmental Microbiology, Leipzig, Permoserstr. 15, D-04318 Leipzig, GermanyFor systems biology, it is important to describe the kinetic and thermodynamic properties of enzyme-catalyzed reactions and reaction cascades quantitatively under conditions prevailing in the cytoplasm. While in part I kinetic models based on irreversible thermodynamics were tested, here in part II, the influence of the presumably most important cytosolic factors was investigated using two glycolytic reactions (i.e., the phosphoglucose isomerase reaction (PGI) with a uni-uni-mechanism and the enolase reaction with an uni-bi-mechanism) as examples. Crowding by macromolecules was simulated using polyethylene glycol (PEG) and bovine serum albumin (BSA). The reactions were monitored calorimetrically and the equilibrium concentrations were evaluated using the equation of state ePC-SAFT. The pH and the crowding agents had the greatest influence on the reaction enthalpy change. Two kinetic models based on irreversible thermodynamics (i.e., single parameter flux-force and two-parameter Noor model) were applied to investigate the influence of cytosolic conditions. The flux-force model describes the influence of cytosolic conditions on reaction kinetics best. Concentrations of magnesium ions and crowding agents had the greatest influence, while temperature and pH-value had a medium influence on the kinetic parameters. With this contribution, we show that the interplay of thermodynamic modeling and calorimetric process monitoring allows a fast and reliable quantification of the influence of cytosolic conditions on kinetic and thermodynamic parameters.https://www.mdpi.com/1422-0067/21/21/7921biothermodynamicsenzyme kineticsglycolysisisothermal titration calorimetrymacromolecular crowding |
| spellingShingle | Kristina Vogel Thorsten Greinert Monique Reichard Christoph Held Hauke Harms Thomas Maskow Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters International Journal of Molecular Sciences biothermodynamics enzyme kinetics glycolysis isothermal titration calorimetry macromolecular crowding |
| title | Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters |
| title_full | Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters |
| title_fullStr | Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters |
| title_full_unstemmed | Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters |
| title_short | Thermodynamics and Kinetics of Glycolytic Reactions. Part II: Influence of Cytosolic Conditions on Thermodynamic State Variables and Kinetic Parameters |
| title_sort | thermodynamics and kinetics of glycolytic reactions part ii influence of cytosolic conditions on thermodynamic state variables and kinetic parameters |
| topic | biothermodynamics enzyme kinetics glycolysis isothermal titration calorimetry macromolecular crowding |
| url | https://www.mdpi.com/1422-0067/21/21/7921 |
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