Identification of Drought-Resistant Genes in Shanlan Upland Rice
Shanlan upland rice is a kind of upland rice and is suitable for planting in the mountains and in hilly terrain. It is mainly found in China’s Hainan province. To discover the drought-resistant genes in Shanlan upland rice, two representative varieties—Baishanuo (BSN) and Dongfang Manpoxiang (MPX)—w...
| Asıl Yazarlar: | , , , , , , , , , |
|---|---|
| Materyal Türü: | Makale |
| Dil: | English |
| Baskı/Yayın Bilgisi: |
MDPI AG
2022-01-01
|
| Seri Bilgileri: | Agriculture |
| Konular: | |
| Online Erişim: | https://www.mdpi.com/2077-0472/12/2/150 |
| _version_ | 1827658024792096768 |
|---|---|
| author | Xiaoling Niu Nanxin Zhai Xinsen Yang Meng Su Caiyue Liu Liu Wang Pengzheng Qu Wuge Liu Qianhua Yuan Xinwu Pei |
| author_facet | Xiaoling Niu Nanxin Zhai Xinsen Yang Meng Su Caiyue Liu Liu Wang Pengzheng Qu Wuge Liu Qianhua Yuan Xinwu Pei |
| author_sort | Xiaoling Niu |
| collection | DOAJ |
| description | Shanlan upland rice is a kind of upland rice and is suitable for planting in the mountains and in hilly terrain. It is mainly found in China’s Hainan province. To discover the drought-resistant genes in Shanlan upland rice, two representative varieties—Baishanuo (BSN) and Dongfang Manpoxiang (MPX)—were selected for transcriptome sequencing, after which gene expression analysis was used to confirm their gene expression patterns. The results demonstrated that 2791 and 829 differentially expressed genes (DEGs) were identified for each variety, including 184 and 58 transcriptional factors, respectively. Expression analysis demonstrated that some genes with unknown functions, such as <i>Os10g0505900</i>, were highly expressed under drought stress treatment. The transcriptomic data and digital gene expression profiling data obtained in this study provide a basis for studying the drought-resistant mechanism in Shanlan upland rice. |
| first_indexed | 2024-03-09T22:53:07Z |
| format | Article |
| id | doaj.art-483f8d1863834e86bdf4008b40fb7d26 |
| institution | Directory Open Access Journal |
| issn | 2077-0472 |
| language | English |
| last_indexed | 2024-03-09T22:53:07Z |
| publishDate | 2022-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Agriculture |
| spelling | doaj.art-483f8d1863834e86bdf4008b40fb7d262023-11-23T18:15:24ZengMDPI AGAgriculture2077-04722022-01-0112215010.3390/agriculture12020150Identification of Drought-Resistant Genes in Shanlan Upland RiceXiaoling Niu0Nanxin Zhai1Xinsen Yang2Meng Su3Caiyue Liu4Liu Wang5Pengzheng Qu6Wuge Liu7Qianhua Yuan8Xinwu Pei9College of Tropical Crops, Hainan University, Haikou 570228, ChinaCollege of Tropical Crops, Hainan University, Haikou 570228, ChinaCollege of Tropical Crops, Hainan University, Haikou 570228, ChinaCollege of Tropical Crops, Hainan University, Haikou 570228, ChinaBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, ChinaBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, ChinaCollege of Tropical Crops, Hainan University, Haikou 570228, ChinaRice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, ChinaCollege of Tropical Crops, Hainan University, Haikou 570228, ChinaBiotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, ChinaShanlan upland rice is a kind of upland rice and is suitable for planting in the mountains and in hilly terrain. It is mainly found in China’s Hainan province. To discover the drought-resistant genes in Shanlan upland rice, two representative varieties—Baishanuo (BSN) and Dongfang Manpoxiang (MPX)—were selected for transcriptome sequencing, after which gene expression analysis was used to confirm their gene expression patterns. The results demonstrated that 2791 and 829 differentially expressed genes (DEGs) were identified for each variety, including 184 and 58 transcriptional factors, respectively. Expression analysis demonstrated that some genes with unknown functions, such as <i>Os10g0505900</i>, were highly expressed under drought stress treatment. The transcriptomic data and digital gene expression profiling data obtained in this study provide a basis for studying the drought-resistant mechanism in Shanlan upland rice.https://www.mdpi.com/2077-0472/12/2/150Shanlan upland riceRNA-seqdrought resistant gene |
| spellingShingle | Xiaoling Niu Nanxin Zhai Xinsen Yang Meng Su Caiyue Liu Liu Wang Pengzheng Qu Wuge Liu Qianhua Yuan Xinwu Pei Identification of Drought-Resistant Genes in Shanlan Upland Rice Agriculture Shanlan upland rice RNA-seq drought resistant gene |
| title | Identification of Drought-Resistant Genes in Shanlan Upland Rice |
| title_full | Identification of Drought-Resistant Genes in Shanlan Upland Rice |
| title_fullStr | Identification of Drought-Resistant Genes in Shanlan Upland Rice |
| title_full_unstemmed | Identification of Drought-Resistant Genes in Shanlan Upland Rice |
| title_short | Identification of Drought-Resistant Genes in Shanlan Upland Rice |
| title_sort | identification of drought resistant genes in shanlan upland rice |
| topic | Shanlan upland rice RNA-seq drought resistant gene |
| url | https://www.mdpi.com/2077-0472/12/2/150 |
| work_keys_str_mv | AT xiaolingniu identificationofdroughtresistantgenesinshanlanuplandrice AT nanxinzhai identificationofdroughtresistantgenesinshanlanuplandrice AT xinsenyang identificationofdroughtresistantgenesinshanlanuplandrice AT mengsu identificationofdroughtresistantgenesinshanlanuplandrice AT caiyueliu identificationofdroughtresistantgenesinshanlanuplandrice AT liuwang identificationofdroughtresistantgenesinshanlanuplandrice AT pengzhengqu identificationofdroughtresistantgenesinshanlanuplandrice AT wugeliu identificationofdroughtresistantgenesinshanlanuplandrice AT qianhuayuan identificationofdroughtresistantgenesinshanlanuplandrice AT xinwupei identificationofdroughtresistantgenesinshanlanuplandrice |