Characterization and Molecular Determinants for β-Lactam Specificity of the Multidrug Efflux Pump AcrD from <i>Salmonella typhimurium</i>

Gram-negative Tripartite Resistance Nodulation and cell Division (RND) superfamily efflux pumps confer various functions, including multidrug and bile salt resistance, quorum-sensing, virulence and can influence the rate of mutations on the chromosome. Multidrug RND efflux systems are often characte...

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Bibliographic Details
Main Authors: Jenifer Cuesta Bernal, Jasmin El-Delik, Stephan Göttig, Klaas M. Pos
Format: Article
Language:English
Published: MDPI AG 2021-12-01
Series:Antibiotics
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Online Access:https://www.mdpi.com/2079-6382/10/12/1494
Description
Summary:Gram-negative Tripartite Resistance Nodulation and cell Division (RND) superfamily efflux pumps confer various functions, including multidrug and bile salt resistance, quorum-sensing, virulence and can influence the rate of mutations on the chromosome. Multidrug RND efflux systems are often characterized by a wide substrate specificity. Similarly to many other RND efflux pump systems, AcrAD-TolC confers resistance toward SDS, novobiocin and deoxycholate. In contrast to the other pumps, however, it in addition confers resistance against aminoglycosides and dianionic β-lactams, such as sulbenicillin, aztreonam and carbenicillin. Here, we could show that AcrD from <i>Salmonella typhimurium</i> confers resistance toward several hitherto unreported AcrD substrates such as temocillin, dicloxacillin, cefazolin and fusidic acid. In order to address the molecular determinants of the <i>S. typhimurium</i> AcrD substrate specificity, we conducted substitution analyses in the putative access and deep binding pockets and in the TM1/TM2 groove region. The variants were tested in <i>E. coli</i> Δ<i>acrB</i>Δ<i>acrD</i> against β-lactams oxacillin, carbenicillin, aztreonam and temocillin. Deep binding pocket variants N136A, D276A and Y327A; access pocket variant R625A; and variants with substitutions in the groove region between TM1 and TM2 conferred a sensitive phenotype and might, therefore, be involved in anionic β-lactam export. In contrast, lower susceptibilities were observed for <i>E. coli</i> cells harbouring deep binding pocket variants T139A, D176A, S180A, F609A, T611A and F627A and the TM1/TM2 groove variant I337A. This study provides the first insights of side chains involved in drug binding and transport for AcrD from <i>S. typhimurium</i>.
ISSN:2079-6382