Optimization of the Illumina COVIDSeq™ protocol for decentralized, cost-effective genomic surveillance
A decentralized surveillance system to identify local outbreaks and monitor SARS-CoV-2 Variants of Concern is one of the primary strategies for the pandemic's containment. Although next-generation sequencing (NGS) is a gold standard for genomic surveillance and variant discovery, the technology...
Main Authors: | Rob E. Carpenter, Vaibhav K. Tamrakar, Sadia Almas, Aditya Sharma, Chase Rowan, Rahul Sharma |
---|---|
Format: | Article |
Language: | English |
Published: |
Elsevier
2023-03-01
|
Series: | Practical Laboratory Medicine |
Subjects: | |
Online Access: | http://www.sciencedirect.com/science/article/pii/S2352551723000057 |
Similar Items
-
High Throughput SARS-CoV-2 Genome Sequencing from 384 Respiratory Samples Using the Illumina COVIDSeq Protocol
by: Nasserdine Papa Mze, et al.
Published: (2023-03-01) -
Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing
by: Laura A. E. Van Poelvoorde, et al.
Published: (2021-10-01) -
Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking
by: Sara Donzelli, et al.
Published: (2022-01-01) -
SARS-CoV-2 Next Generation Sequencing (NGS) data from clinical isolates from the East Texas Region of the United States
by: Rob E. Carpenter, et al.
Published: (2023-08-01) -
Sequencing, de novo assembly, functional annotation and analysis of Phyllanthus amarus leaf transcriptome using the Illumina platform
by: Aparupa eBose Mazumdar, et al.
Published: (2016-01-01)