Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57
Abstract By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and th...
| Main Authors: | , , , , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
Nature Portfolio
2024-02-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-024-03057-x |
| _version_ | 1827328668199813120 |
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| author | Yuanbao Lei Yunjiang Zhang Linyun Xu Wendong Ma Ziqi Zhou Jie Li Pengyu Quan Muhiuddin Faruquee Dechen Yang Fan Zhang Yongli Zhou Guangjun Quan Xiuqin Zhao Wensheng Wang Bailong Liu Zhikang Li Jianlong Xu Tianqing Zheng |
| author_facet | Yuanbao Lei Yunjiang Zhang Linyun Xu Wendong Ma Ziqi Zhou Jie Li Pengyu Quan Muhiuddin Faruquee Dechen Yang Fan Zhang Yongli Zhou Guangjun Quan Xiuqin Zhao Wensheng Wang Bailong Liu Zhikang Li Jianlong Xu Tianqing Zheng |
| author_sort | Yuanbao Lei |
| collection | DOAJ |
| description | Abstract By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then generate a set of annotation data for an early-matured Geng/japonica glutinous rice mega variety genome, Longgeng 57 (LG57), which carries multiple elite traits including good grain quality and wide adaptability. Together with the SRS data from three parents of LG57, pedigree genome variations were called for three representative types of genes. These data sets can be used for deep variation mining, aid in the discovery of new insights into genome structure, function, and evolution, and help to provide essential support to biological research in general. |
| first_indexed | 2024-03-07T15:20:51Z |
| format | Article |
| id | doaj.art-498c342530bb4932b12c4bf70285046f |
| institution | Directory Open Access Journal |
| issn | 2052-4463 |
| language | English |
| last_indexed | 2024-03-07T15:20:51Z |
| publishDate | 2024-02-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj.art-498c342530bb4932b12c4bf70285046f2024-03-05T17:39:12ZengNature PortfolioScientific Data2052-44632024-02-011111810.1038/s41597-024-03057-xPedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57Yuanbao Lei0Yunjiang Zhang1Linyun Xu2Wendong Ma3Ziqi Zhou4Jie Li5Pengyu Quan6Muhiuddin Faruquee7Dechen Yang8Fan Zhang9Yongli Zhou10Guangjun Quan11Xiuqin Zhao12Wensheng Wang13Bailong Liu14Zhikang Li15Jianlong Xu16Tianqing Zheng17Jiamusi Rice Research Institute of Heilongjiang Academy of Agricultural SciencesJiamusi Rice Research Institute of Heilongjiang Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesJiamusi Rice Research Institute of Heilongjiang Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesHeilongjiang Lianjiangkou Seed Co., LtdHeilongjiang Lianjiangkou Seed Co., LtdInternational Rice Research Institute, Bangladesh OfficeInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesHeilongjiang Lianjiangkou Seed Co., LtdInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesRice Research Institute, Guangxi Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesInstitute of Crop Sciences/State Key Laboratory of Crop Gene Resources and Breeding/National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural SciencesAbstract By using PacBio HiFi technology, we produced over 700 Gb of long-read sequencing (LRS) raw data; and by using Illumina paired-end whole-genome shotgun (WGS) sequencing technology, we generated more than 70 Gb of short-read sequencing (SRS) data. With LRS data, we assembled one genome and then generate a set of annotation data for an early-matured Geng/japonica glutinous rice mega variety genome, Longgeng 57 (LG57), which carries multiple elite traits including good grain quality and wide adaptability. Together with the SRS data from three parents of LG57, pedigree genome variations were called for three representative types of genes. These data sets can be used for deep variation mining, aid in the discovery of new insights into genome structure, function, and evolution, and help to provide essential support to biological research in general.https://doi.org/10.1038/s41597-024-03057-x |
| spellingShingle | Yuanbao Lei Yunjiang Zhang Linyun Xu Wendong Ma Ziqi Zhou Jie Li Pengyu Quan Muhiuddin Faruquee Dechen Yang Fan Zhang Yongli Zhou Guangjun Quan Xiuqin Zhao Wensheng Wang Bailong Liu Zhikang Li Jianlong Xu Tianqing Zheng Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 Scientific Data |
| title | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_full | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_fullStr | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_full_unstemmed | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_short | Pedigree genome data of an early-matured Geng/japonica glutinous rice mega variety Longgeng 57 |
| title_sort | pedigree genome data of an early matured geng japonica glutinous rice mega variety longgeng 57 |
| url | https://doi.org/10.1038/s41597-024-03057-x |
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