The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae)
Apostasia ramifera S. C. Chen & K. Y. Lang 1986 is a Chinese endemic and endangered orchid. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of A. ramifera. The cp genome was 157,518 bp in length with a typical quadripartite structure, which was comprised...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1872429 |
| _version_ | 1827772598242508800 |
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| author | Fang Zheng Jian-Bing Chen Wei-Rong Liu Meng Wang |
| author_facet | Fang Zheng Jian-Bing Chen Wei-Rong Liu Meng Wang |
| author_sort | Fang Zheng |
| collection | DOAJ |
| description | Apostasia ramifera S. C. Chen & K. Y. Lang 1986 is a Chinese endemic and endangered orchid. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of A. ramifera. The cp genome was 157,518 bp in length with a typical quadripartite structure, which was comprised of one large single-copy region (LSC, 86,353 bp) and one small single-copy region (SSC, 16,445 bp) separated by two inverted repeat regions (IRs, 27,360 bp). The cp genome encoded 133 genes, which included 87 protein-coding genes, 38 tRNAs and eight rRNAs. The average GC content of the genome is 35.8%. The phylogenetic analysis showed that A. ramifera was sister with A. wallichii and then nested in the other Apostasia species. |
| first_indexed | 2024-03-11T13:10:29Z |
| format | Article |
| id | doaj.art-49f982f241a14c2c900cf2af2d0970e1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:29Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-49f982f241a14c2c900cf2af2d0970e12023-11-03T14:08:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016247047110.1080/23802359.2021.18724291872429The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae)Fang Zheng0Jian-Bing Chen1Wei-Rong Liu2Meng Wang3Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, The Orchid Conservation and Research Centre of ShenzhenKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, The Orchid Conservation and Research Centre of ShenzhenKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, The Orchid Conservation and Research Centre of ShenzhenKey Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, The Orchid Conservation and Research Centre of ShenzhenApostasia ramifera S. C. Chen & K. Y. Lang 1986 is a Chinese endemic and endangered orchid. Here, we report the complete chloroplast (cp) genome sequence and the cp genome features of A. ramifera. The cp genome was 157,518 bp in length with a typical quadripartite structure, which was comprised of one large single-copy region (LSC, 86,353 bp) and one small single-copy region (SSC, 16,445 bp) separated by two inverted repeat regions (IRs, 27,360 bp). The cp genome encoded 133 genes, which included 87 protein-coding genes, 38 tRNAs and eight rRNAs. The average GC content of the genome is 35.8%. The phylogenetic analysis showed that A. ramifera was sister with A. wallichii and then nested in the other Apostasia species.http://dx.doi.org/10.1080/23802359.2021.1872429apostasia ramiferaapostasiachloroplast genomephylogenetic analysis |
| spellingShingle | Fang Zheng Jian-Bing Chen Wei-Rong Liu Meng Wang The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) Mitochondrial DNA. Part B. Resources apostasia ramifera apostasia chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) |
| title_full | The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) |
| title_fullStr | The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) |
| title_short | The complete chloroplast genome of an endangered species Apostasia ramifera (Orchidaceae) |
| title_sort | complete chloroplast genome of an endangered species apostasia ramifera orchidaceae |
| topic | apostasia ramifera apostasia chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1872429 |
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