Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth
Lignin plays an important role in plant growth and development. It serves as a raw material for the manufacture of paper, animal feed, and chemical fertilizers. However, the regulation of lignin biosynthesis genes and the composition of the relevant gene families remain unclear in many plant species...
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| Format: | Article |
| Language: | English |
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Maximum Academic Press
2021-01-01
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| Series: | Forestry Research |
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| Online Access: | https://www.maxapress.com/article/doi/10.48130/FR-2021-0008 |
| _version_ | 1797293158140215296 |
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| author | Guoyuan Liu Yixin Li Yu Liu Hongyi Guo Jiaming Guo Yawen Du Yanhong Chen Chunmei Yu Fei Zhong Bolin Lian Jian Zhang |
| author_facet | Guoyuan Liu Yixin Li Yu Liu Hongyi Guo Jiaming Guo Yawen Du Yanhong Chen Chunmei Yu Fei Zhong Bolin Lian Jian Zhang |
| author_sort | Guoyuan Liu |
| collection | DOAJ |
| description | Lignin plays an important role in plant growth and development. It serves as a raw material for the manufacture of paper, animal feed, and chemical fertilizers. However, the regulation of lignin biosynthesis genes and the composition of the relevant gene families remain unclear in many plant species. Here, we identified and characterized 11 families of monolignol biosynthesis genes in Salix matsudana Koidz. Based on phylogenetic analysis of lignin biosynthesis genes from nine angiosperm species (Arabidopsis thaliana, Oryza sativa, Zea mays, Solanum lycopersicum, S. suchowensis, S. purpurea, Populus euphratica, P. trichocarpa, and S. matsudana), the 11 gene families could be divided into two classes that differed in their apparent evolutionary history. We compared the distribution of lignin biosynthesis genes between the two sub-genomes (At and Bt) of S. matsudana and found that more duplicated genes were present in the Bt sub-genome. We analyzed RNA sequencing data from two parents of contrasting height and two of their F1 progeny, and detected 23 differentially expressed genes (DEGs) that may regulate accelerated growth. We analyzed the promoter regions of the lignin-related DEGs and identified several hormone-related (auxin, ethylene, and cytokinin) transcription factor binding sites. These results provide an important foundation for future studies on the molecular mechanisms and genetic regulation of lignin biosynthesis and its relationship to accelerated growth in forest trees. |
| first_indexed | 2024-03-07T20:09:48Z |
| format | Article |
| id | doaj.art-4a08e50b84ca4256b3676c1a0ebfe168 |
| institution | Directory Open Access Journal |
| issn | 2767-3812 |
| language | English |
| last_indexed | 2024-03-07T20:09:48Z |
| publishDate | 2021-01-01 |
| publisher | Maximum Academic Press |
| record_format | Article |
| series | Forestry Research |
| spelling | doaj.art-4a08e50b84ca4256b3676c1a0ebfe1682024-02-28T01:55:17ZengMaximum Academic PressForestry Research2767-38122021-01-011111110.48130/FR-2021-0008FR-2021-0008Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growthGuoyuan Liu0Yixin Li1Yu Liu2Hongyi Guo3Jiaming Guo4Yawen Du5Yanhong Chen6Chunmei Yu7Fei Zhong8Bolin Lian9Jian Zhang10Key Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaKey Lab of Landscape Plant Genetics and Breeding, School of Life Science, Nantong University, Nantong, ChinaLignin plays an important role in plant growth and development. It serves as a raw material for the manufacture of paper, animal feed, and chemical fertilizers. However, the regulation of lignin biosynthesis genes and the composition of the relevant gene families remain unclear in many plant species. Here, we identified and characterized 11 families of monolignol biosynthesis genes in Salix matsudana Koidz. Based on phylogenetic analysis of lignin biosynthesis genes from nine angiosperm species (Arabidopsis thaliana, Oryza sativa, Zea mays, Solanum lycopersicum, S. suchowensis, S. purpurea, Populus euphratica, P. trichocarpa, and S. matsudana), the 11 gene families could be divided into two classes that differed in their apparent evolutionary history. We compared the distribution of lignin biosynthesis genes between the two sub-genomes (At and Bt) of S. matsudana and found that more duplicated genes were present in the Bt sub-genome. We analyzed RNA sequencing data from two parents of contrasting height and two of their F1 progeny, and detected 23 differentially expressed genes (DEGs) that may regulate accelerated growth. We analyzed the promoter regions of the lignin-related DEGs and identified several hormone-related (auxin, ethylene, and cytokinin) transcription factor binding sites. These results provide an important foundation for future studies on the molecular mechanisms and genetic regulation of lignin biosynthesis and its relationship to accelerated growth in forest trees.https://www.maxapress.com/article/doi/10.48130/FR-2021-0008lignin biosynthesissalix matsudana koidzaccelerated growthevolutionrna sequencing |
| spellingShingle | Guoyuan Liu Yixin Li Yu Liu Hongyi Guo Jiaming Guo Yawen Du Yanhong Chen Chunmei Yu Fei Zhong Bolin Lian Jian Zhang Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth Forestry Research lignin biosynthesis salix matsudana koidz accelerated growth evolution rna sequencing |
| title | Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth |
| title_full | Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth |
| title_fullStr | Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth |
| title_full_unstemmed | Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth |
| title_short | Genome-wide identification and analysis of monolignol biosynthesis genes in Salix matsudana Koidz and their relationship to accelerated growth |
| title_sort | genome wide identification and analysis of monolignol biosynthesis genes in salix matsudana koidz and their relationship to accelerated growth |
| topic | lignin biosynthesis salix matsudana koidz accelerated growth evolution rna sequencing |
| url | https://www.maxapress.com/article/doi/10.48130/FR-2021-0008 |
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