scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing
Abstract The interaction between a pathogen and a host is a highly dynamic process in which both agents activate complex programs. Here, we introduce a single-cell RNA-sequencing method, scDual-Seq, that simultaneously captures both host and pathogen transcriptomes. We use it to study the process of...
Main Authors: | Gal Avital, Roi Avraham, Amy Fan, Tamar Hashimshony, Deborah T. Hung, Itai Yanai |
---|---|
Format: | Article |
Language: | English |
Published: |
BMC
2017-10-01
|
Series: | Genome Biology |
Online Access: | http://link.springer.com/article/10.1186/s13059-017-1340-x |
Similar Items
-
scDual-Seq of Toxoplasma gondii-infected mouse BMDCs reveals heterogeneity and differential infection dynamics
by: Franziska Hildebrandt, et al.
Published: (2023-07-01) -
CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification
by: Tamar Hashimshony, et al.
Published: (2012-09-01) -
Gene regulatory patterning codes in early cell fate specification of the C. elegans embryo
by: Alison G Cole, et al.
Published: (2024-01-01) -
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
by: Hashimshony, Tamar, et al.
Published: (2016) -
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.
by: Camden Jansen, et al.
Published: (2019-11-01)