Fast Phylogeny of SARS-CoV-2 by Compression

Fast Phylogeny of SARS-CoV-2 by Compression

The compression method to assess similarity, in the sense of having a small normalized compression distance (NCD), was developed based on algorithmic information theory to quantify the similarity in files ranging from words and languages to genomes and music pieces. It has been validated on objects...

Full description

Bibliographic Details
Main Authors:	Rudi L. Cilibrasi, Paul M. B. Vitányi
Format:	Article
Language:	English
Published:	MDPI AG 2022-03-01
Series:	Entropy
Subjects:	compression phylogeny COVID-19 virus
Online Access:	https://www.mdpi.com/1099-4300/24/4/439

Similar Items

Assessing the Impact of SARS-CoV-2 Lineages and Mutations on Patient Survival
by: Carlos Loucera, et al.
Published: (2022-08-01)

SARS-CoV-2 uses CD4 to infect T helper lymphocytes
by: Natalia S Brunetti, et al.
Published: (2023-07-01)

Comparing and Contrasting MERS, SARS-CoV, and SARS-CoV-2: Prevention, Transmission, Management, and Vaccine Development
by: Mohammad Oves, et al.
Published: (2020-11-01)

Structural characterization of the Human Endogenous Retrovirus and SARS-CoV-2
by: Krebs, AS
Published: (2023)

Simulating the Environmental Spread of SARS-CoV-2 via Cough and the Effect of Personal Mitigations
by: Claire Bailey, et al.
Published: (2022-11-01)

Deciphering the Relationship between SARS-CoV-2 and Cancer
by: Michele Costanzo, et al.
Published: (2023-04-01)

SARS-CoV-2 virus: Vaccines in development
by: Qingrui Huang, et al.
Published: (2021-03-01)

Dynamic of SARS-CoV-2 spread in Bulgaria, 2020-2022
by: Iveta Madzharova, et al.
Published: (2023-08-01)

Estimating the impact of influenza on the epidemiological dynamics of SARS-CoV-2
by: Matthieu Domenech de Cellès, et al.
Published: (2021-12-01)

Electrochemical Biosensors for the Detection of SARS-CoV-2 and Other Viruses
by: Saim Imran, et al.
Published: (2021-02-01)

Comparative Study of SARS-CoV-2, SARS-CoV-1, MERS-CoV, HCoV-229E and Influenza Host Gene Expression in Asthma: Importance of Sex, Disease Severity, and Epithelial Heterogeneity
by: Mackenzie E. Coden, et al.
Published: (2021-06-01)

Wastewater Surveillance of SARS-CoV-2 RNA in a Prison Facility
by: Ocean Thakali, et al.
Published: (2024-02-01)

The domestication of SARS-CoV-2 into a seasonal infection by viral variants
by: Ryley D. McClelland, et al.
Published: (2023-12-01)

Deciphering SARS-CoV-2 Virologic and Immunologic Features
by: Grégorie Lebeau, et al.
Published: (2020-08-01)

Viral Related Tools against SARS-CoV-2
by: Laura Fernandez-Garcia, et al.
Published: (2020-10-01)

Effectiveness of Toothpastes on SARS-CoV-2 Viral Load in Saliva
by: Fernanda P Eduardo, et al.
Published: (2022-12-01)

Impact of the SARS‐CoV‐2 pandemic on the overall respiratory viruses' transmission in a cancer care setting
by: Sawsan Mubarak, et al.
Published: (2023-11-01)

An overview on viral interference during SARS-CoV-2 pandemic
by: Luigi Matera, et al.
Published: (2023-12-01)

Secretory Vesicles Are the Principal Means of SARS-CoV-2 Egress
by: Sébastien Eymieux, et al.
Published: (2021-08-01)

Zika and SARS-CoV-2: neuroinflammation and neurodegenerative outcomes
by: Jenniffer Ramos Martins, et al.
Published: (2022-11-01)

SARS-CoV-2 and Other Respiratory Viruses in Human Olfactory Pathophysiology
by: Serigne Fallou Wade, et al.
Published: (2024-03-01)

Inactivation of SARS-CoV-2 on Surfaces by Cold-Plasma-Generated Reactive Species
by: Som V. Thomas, et al.
Published: (2023-02-01)

Antibody Responses to SARS-CoV-2 Antigens in Humans and Animals
by: Hyunsuh Kim, et al.
Published: (2020-11-01)

Unpacking Pandora from Its Box: Deciphering the Molecular Basis of the SARS-CoV-2 Coronavirus
by: Valerie Bríd O’Leary, et al.
Published: (2020-12-01)

SARS-CoV-2 wastewater surveillance in the Czech Republic: Spatial and temporal differences in SARS-CoV-2 RNA concentrations and relationship to clinical data and wastewater parameters
by: Kateřina Sovová, et al.
Published: (2024-05-01)

Prevalence of Co-Infections with Respiratory Viruses in Individuals Investigated for SARS-CoV-2 in Ontario, Canada
by: Adriana Peci, et al.
Published: (2021-01-01)

Distinguishing SARS-CoV-2 Infection and Non-SARS-CoV-2 Viral Infections in Adult Patients through Clinical Score Tools
by: Rujipas Sirijatuphat, et al.
Published: (2023-01-01)

Sequence similarity of SARS-CoV-2 and humans: Implications for SARS-CoV-2 detection
by: Heng Li, et al.
Published: (2022-07-01)

Seroprevalence of SARS-CoV-2 and assessment of epidemiologic determinants in Portuguese municipal workers
by: Nuno Barros Ferreira, et al.
Published: (2022-02-01)

The Therapy of SARS-CoV-2 Infection in Children
by: Kathryn M. Edwards
Published: (2023-12-01)

Superantigens and SARS-CoV-2
by: Adam Hamdy, et al.
Published: (2022-03-01)

Cross-reactivity of SARS-CoV-2– and influenza A–specific T cells in individuals exposed to SARS-CoV-2
by: Worarat Chaisawangwong, et al.
Published: (2022-09-01)

First isolation and characterization of SARS-CoV-2 from COVID-19 patient of North East India
by: Aniruddha Jakharia, et al.
Published: (2024-01-01)

SARS-CoV-2 Persistence: Data Summary up to Q2 2020
by: Gabriele Cervino, et al.
Published: (2020-09-01)

SARS-CoV-2 Infection and Pancreatic β Cell Failure
by: Keiichiro Mine, et al.
Published: (2021-12-01)

Tonsils are major sites of persistence of SARS-CoV-2 in children
by: Thais Melquiades de Lima, et al.
Published: (2023-10-01)

Correlation of SARS-CoV-2 Neutralization with Antibody Levels in Vaccinated Individuals
by: Shazeda Haque Chowdhury, et al.
Published: (2023-03-01)

An overview of viral mutagenesis and the impact on pathogenesis of SARS-CoV-2 variants
by: Muhammad Zafar Irshad Khan, et al.
Published: (2022-11-01)

Polymeric Materials as Indispensable Tools to Fight RNA Viruses: SARS-CoV-2 and Influenza A
by: Ariana C. F. Santos, et al.
Published: (2022-12-01)

Will a new clade of SARS-CoV-2 imported into the community spark a fourth wave of the COVID-19 outbreak in Hong Kong?
by: Gilman Kit-Hang Siu, et al.
Published: (2020-01-01)