Databases and bioinformatics tools for rice research
Rice is one of the most important agricultural crop in the world and widely studied model plant. The completion of whole genome sequence of rice (Oryza sativa) and high-throughput experimental platforms have led to the generation of the tremendous amount of data, and development of the specialized d...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2016-11-01
|
| Series: | Current Plant Biology |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2214662816300810 |
| _version_ | 1819100664294277120 |
|---|---|
| author | Priyanka Garg Pankaj Jaiswal |
| author_facet | Priyanka Garg Pankaj Jaiswal |
| author_sort | Priyanka Garg |
| collection | DOAJ |
| description | Rice is one of the most important agricultural crop in the world and widely studied model plant. The completion of whole genome sequence of rice (Oryza sativa) and high-throughput experimental platforms have led to the generation of the tremendous amount of data, and development of the specialized databases and bioinformatics tools for data processing, efficient organization, analysis, and visualization. In this article, we discuss a collection of biological databases that host genomics data on sequence, gene expression, genetic variation, gene-interactomes, and pathways, and facilitate data analysis and visualization. |
| first_indexed | 2024-12-22T01:06:22Z |
| format | Article |
| id | doaj.art-4a566e690a8640ab80ef49fc2c34666c |
| institution | Directory Open Access Journal |
| issn | 2214-6628 |
| language | English |
| last_indexed | 2024-12-22T01:06:22Z |
| publishDate | 2016-11-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Current Plant Biology |
| spelling | doaj.art-4a566e690a8640ab80ef49fc2c34666c2022-12-21T18:44:04ZengElsevierCurrent Plant Biology2214-66282016-11-017C395210.1016/j.cpb.2016.12.006Databases and bioinformatics tools for rice researchPriyanka GargPankaj JaiswalRice is one of the most important agricultural crop in the world and widely studied model plant. The completion of whole genome sequence of rice (Oryza sativa) and high-throughput experimental platforms have led to the generation of the tremendous amount of data, and development of the specialized databases and bioinformatics tools for data processing, efficient organization, analysis, and visualization. In this article, we discuss a collection of biological databases that host genomics data on sequence, gene expression, genetic variation, gene-interactomes, and pathways, and facilitate data analysis and visualization.http://www.sciencedirect.com/science/article/pii/S2214662816300810Biological databaseRiceGene expressionBiocurationOntologyPathways |
| spellingShingle | Priyanka Garg Pankaj Jaiswal Databases and bioinformatics tools for rice research Current Plant Biology Biological database Rice Gene expression Biocuration Ontology Pathways |
| title | Databases and bioinformatics tools for rice research |
| title_full | Databases and bioinformatics tools for rice research |
| title_fullStr | Databases and bioinformatics tools for rice research |
| title_full_unstemmed | Databases and bioinformatics tools for rice research |
| title_short | Databases and bioinformatics tools for rice research |
| title_sort | databases and bioinformatics tools for rice research |
| topic | Biological database Rice Gene expression Biocuration Ontology Pathways |
| url | http://www.sciencedirect.com/science/article/pii/S2214662816300810 |
| work_keys_str_mv | AT priyankagarg databasesandbioinformaticstoolsforriceresearch AT pankajjaiswal databasesandbioinformaticstoolsforriceresearch |