Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes)
Thai ricefish (Oryzias minutillus) is the smallest species in the Oryzias genus, widely distributed throughout Thailand. They are important in the trophic level of food webs within freshwater ecosystems. However, knowledge about the molecular data of this fish is lacking. Therefore, in this study,...
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| Format: | Article |
| Language: | English |
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Prince of Songkla University
2022-08-01
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| Series: | Songklanakarin Journal of Science and Technology (SJST) |
| Subjects: | |
| Online Access: | https://sjst.psu.ac.th/journal/44-4/29.pdf |
| _version_ | 1827964097901101056 |
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| author | Arin Ngamniyom Kun Silprasit |
| author_facet | Arin Ngamniyom Kun Silprasit |
| author_sort | Arin Ngamniyom |
| collection | DOAJ |
| description | Thai ricefish (Oryzias minutillus) is the smallest species in the Oryzias genus, widely distributed throughout Thailand.
They are important in the trophic level of food webs within freshwater ecosystems. However, knowledge about the molecular
data of this fish is lacking. Therefore, in this study, we surveyed the genome data of Thai ricefish collected from Mae Hong Son
Province, Northwestern Thailand. In the initial assembly, the total genome and mitochondrial genome of Thai ricefish were 824
Mb and 16,954 bp, respectively. The total sizes of contig and scaffold were 547.7 and 585.9 Mb, respectively. The total genome
size per mitochondrial size was 0.049. Phylogenetic relationship of Thai ricefish and related species of Oryzias was constructed
based on mitochondrial genome. The nucleotide similarity of all genes in the mitogenome of Thai ricefish was compared with the
related species of Oryzias from nucleotide database of the National Center for Biotechnology Information. The results provide
data that increase knowledge of molecular genetics and a basis for further work on fish in genus Oryzias. |
| first_indexed | 2024-04-09T17:10:10Z |
| format | Article |
| id | doaj.art-4acf0792058b4c2ebf71b99c87cc5d1c |
| institution | Directory Open Access Journal |
| issn | 0125-3395 |
| language | English |
| last_indexed | 2024-04-09T17:10:10Z |
| publishDate | 2022-08-01 |
| publisher | Prince of Songkla University |
| record_format | Article |
| series | Songklanakarin Journal of Science and Technology (SJST) |
| spelling | doaj.art-4acf0792058b4c2ebf71b99c87cc5d1c2023-04-20T07:52:04ZengPrince of Songkla UniversitySongklanakarin Journal of Science and Technology (SJST)0125-33952022-08-014441153115810.14456/sjst-psu.2022.149Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes)Arin Ngamniyom0Kun Silprasit1Major in Environment, Faculty of Environmental Culture and Eco-tourism, Srinakharinwirot University, Wattana, Bangkok, 10110 ThailandMajor in Environment, Faculty of Environmental Culture and Eco-tourism, Srinakharinwirot University, Wattana, Bangkok, 10110 ThailandThai ricefish (Oryzias minutillus) is the smallest species in the Oryzias genus, widely distributed throughout Thailand. They are important in the trophic level of food webs within freshwater ecosystems. However, knowledge about the molecular data of this fish is lacking. Therefore, in this study, we surveyed the genome data of Thai ricefish collected from Mae Hong Son Province, Northwestern Thailand. In the initial assembly, the total genome and mitochondrial genome of Thai ricefish were 824 Mb and 16,954 bp, respectively. The total sizes of contig and scaffold were 547.7 and 585.9 Mb, respectively. The total genome size per mitochondrial size was 0.049. Phylogenetic relationship of Thai ricefish and related species of Oryzias was constructed based on mitochondrial genome. The nucleotide similarity of all genes in the mitogenome of Thai ricefish was compared with the related species of Oryzias from nucleotide database of the National Center for Biotechnology Information. The results provide data that increase knowledge of molecular genetics and a basis for further work on fish in genus Oryzias.https://sjst.psu.ac.th/journal/44-4/29.pdfthai medakanorthwestern thailandgenome sizemitogenome |
| spellingShingle | Arin Ngamniyom Kun Silprasit Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) Songklanakarin Journal of Science and Technology (SJST) thai medaka northwestern thailand genome size mitogenome |
| title | Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) |
| title_full | Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) |
| title_fullStr | Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) |
| title_full_unstemmed | Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) |
| title_short | Genome survey report of Thai ricefish (Oryzias minutillus) (Actinopterygii: Beloniformes) |
| title_sort | genome survey report of thai ricefish oryzias minutillus actinopterygii beloniformes |
| topic | thai medaka northwestern thailand genome size mitogenome |
| url | https://sjst.psu.ac.th/journal/44-4/29.pdf |
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