Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng
Rhizosphere microbiome promotes plant growth; however, the succession of rhizosphere microbial community during the growth stages of perennial medicinal plant Panax notoginseng (P. notoginseng) is still unclear. Here, amplicon sequencing was performed to assess the succession characteristics of rhiz...
| Main Authors: | , , , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Frontiers Media S.A.
2022-04-01
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| Series: | Frontiers in Microbiology |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fmicb.2022.853077/full |
| _version_ | 1828872722173657088 |
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| author | Guangfei Wei Mengzhi Li Guozhuang Zhang Zhongjian Chen Fugang Wei Shuo Jiao Jun Qian Yong Wang Jianhe Wei Yitao Wang Xiangxiao Meng Martin Fitzgerald Yuqi Yu Linlin Dong Shilin Chen |
| author_facet | Guangfei Wei Mengzhi Li Guozhuang Zhang Zhongjian Chen Fugang Wei Shuo Jiao Jun Qian Yong Wang Jianhe Wei Yitao Wang Xiangxiao Meng Martin Fitzgerald Yuqi Yu Linlin Dong Shilin Chen |
| author_sort | Guangfei Wei |
| collection | DOAJ |
| description | Rhizosphere microbiome promotes plant growth; however, the succession of rhizosphere microbial community during the growth stages of perennial medicinal plant Panax notoginseng (P. notoginseng) is still unclear. Here, amplicon sequencing was performed to assess the succession characteristics of rhizosphere microbiomes during developmental stages. Results showed that bacterial and fungal communities were mainly shaped by the development stages. The microbial α-diversities first increased and then decreased with plant growth and the variation in microbial composition was active at the 3-year root growth (3YR) stage. The variation trend of cross-domain co-occurrence network complexity was similar to that of α-diversities. Cross-domain nodes decreased at the 3YR stage and fungal nodes increased at the 3YR stage. This study provided a detailed and systematic survey of rhizosphere microbiomes during the growth stages of P. notoginseng. The findings revealed that the development stages of P. notoginseng drove the temporal dynamics of rhizosphere communities. This study helps in harnessing the power of microbiomes to evaluate herbal medicine growth and provides valuable information to guide the microbial breeding of medical plants. |
| first_indexed | 2024-12-13T07:00:22Z |
| format | Article |
| id | doaj.art-4ae648038ac5461cbcae3a385e8cf34f |
| institution | Directory Open Access Journal |
| issn | 1664-302X |
| language | English |
| last_indexed | 2024-12-13T07:00:22Z |
| publishDate | 2022-04-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Microbiology |
| spelling | doaj.art-4ae648038ac5461cbcae3a385e8cf34f2022-12-21T23:55:56ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2022-04-011310.3389/fmicb.2022.853077853077Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginsengGuangfei Wei0Mengzhi Li1Guozhuang Zhang2Zhongjian Chen3Fugang Wei4Shuo Jiao5Jun Qian6Yong Wang7Jianhe Wei8Yitao Wang9Xiangxiao Meng10Martin Fitzgerald11Yuqi Yu12Linlin Dong13Shilin Chen14Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaInstitute of Sanqi Research, Wenshan University, Wenshan, ChinaWenshan Miaoxiang Notoginseng Technology, Co., Ltd., Wenshan, ChinaState Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaInstitute of Sanqi Research, Wenshan University, Wenshan, ChinaHainan Provincial Key Laboratory of Resources Conservation and Development of Southern Medicine, Hainan Branch of the Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haikou, ChinaState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Taipa, Macao SAR, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaAshdale Clinic, Cork, IrelandWenshan Miaoxiang Notoginseng Technology, Co., Ltd., Wenshan, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaKey Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, ChinaRhizosphere microbiome promotes plant growth; however, the succession of rhizosphere microbial community during the growth stages of perennial medicinal plant Panax notoginseng (P. notoginseng) is still unclear. Here, amplicon sequencing was performed to assess the succession characteristics of rhizosphere microbiomes during developmental stages. Results showed that bacterial and fungal communities were mainly shaped by the development stages. The microbial α-diversities first increased and then decreased with plant growth and the variation in microbial composition was active at the 3-year root growth (3YR) stage. The variation trend of cross-domain co-occurrence network complexity was similar to that of α-diversities. Cross-domain nodes decreased at the 3YR stage and fungal nodes increased at the 3YR stage. This study provided a detailed and systematic survey of rhizosphere microbiomes during the growth stages of P. notoginseng. The findings revealed that the development stages of P. notoginseng drove the temporal dynamics of rhizosphere communities. This study helps in harnessing the power of microbiomes to evaluate herbal medicine growth and provides valuable information to guide the microbial breeding of medical plants.https://www.frontiersin.org/articles/10.3389/fmicb.2022.853077/fullPanax notoginsengrhizosphere microbiomesdevelopmental stagestemporal dynamicslife cycle |
| spellingShingle | Guangfei Wei Mengzhi Li Guozhuang Zhang Zhongjian Chen Fugang Wei Shuo Jiao Jun Qian Yong Wang Jianhe Wei Yitao Wang Xiangxiao Meng Martin Fitzgerald Yuqi Yu Linlin Dong Shilin Chen Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng Frontiers in Microbiology Panax notoginseng rhizosphere microbiomes developmental stages temporal dynamics life cycle |
| title | Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng |
| title_full | Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng |
| title_fullStr | Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng |
| title_full_unstemmed | Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng |
| title_short | Temporal Dynamics of Rhizosphere Communities Across the Life Cycle of Panax notoginseng |
| title_sort | temporal dynamics of rhizosphere communities across the life cycle of panax notoginseng |
| topic | Panax notoginseng rhizosphere microbiomes developmental stages temporal dynamics life cycle |
| url | https://www.frontiersin.org/articles/10.3389/fmicb.2022.853077/full |
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