Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests

The emergence of the new coronavirus SARS-CoV-2 in late 2019 led to the global pandemic COVID-19, causing a profound socioeconomic crisis. Adequate diagnostic tools need to be developed to control the ongoing spread of infection. Virus-specific humoral immunity in COVID-19 patients and those vaccina...

Full description

Bibliographic Details
Main Authors: Alexandra Rak, Svetlana Donina, Yana Zabrodskaya, Larisa Rudenko, Irina Isakova-Sivak
Format: Article
Language:English
Published: MDPI AG 2022-09-01
Series:Viruses
Subjects:
Online Access:https://www.mdpi.com/1999-4915/14/9/2041
_version_ 1797481305475121152
author Alexandra Rak
Svetlana Donina
Yana Zabrodskaya
Larisa Rudenko
Irina Isakova-Sivak
author_facet Alexandra Rak
Svetlana Donina
Yana Zabrodskaya
Larisa Rudenko
Irina Isakova-Sivak
author_sort Alexandra Rak
collection DOAJ
description The emergence of the new coronavirus SARS-CoV-2 in late 2019 led to the global pandemic COVID-19, causing a profound socioeconomic crisis. Adequate diagnostic tools need to be developed to control the ongoing spread of infection. Virus-specific humoral immunity in COVID-19 patients and those vaccinated with specific vaccines has been characterized in numerous studies, mainly using Spike protein-based serology tests. However, Spike protein and specifically its receptor-binding domain (RBD) are mutation-prone, suggesting the reduced sensitivity of the validated serology tests in detecting antibodies raised to variants of concern (VOC). The viral nucleocapsid (N) protein is more conserved compared to Spike, but little is known about cross-reactivity of the N-specific antibodies between the ancestral B.1 virus and different VOCs. Here, we generated recombinant N phosphoproteins from different SARS-CoV-2 strains and analyzed the magnitude of N-specific antibodies in COVID-19 convalescent sera using an in-house N-based ELISA test system. We found a strong positive correlation in the magnitude of anti-N (B.1) antibodies and antibodies specific to various VOCs in COVID-19-recovered patients, suggesting that the N-binding antibodies are highly cross-reactive, and the most immunogenic epitopes within this protein are not under selective pressure. Overall, our study suggests that the RBD-based serology tests should be timely updated to reflect the constantly evolving nature of the SARS-CoV-2 Spike protein, whereas the validated N-based test systems can be used for the analysis of sera from COVID-19 patients regardless of the strain that caused the infection.
first_indexed 2024-03-09T22:13:12Z
format Article
id doaj.art-4b44e271fac64cfc9df32ef48e966fe7
institution Directory Open Access Journal
issn 1999-4915
language English
last_indexed 2024-03-09T22:13:12Z
publishDate 2022-09-01
publisher MDPI AG
record_format Article
series Viruses
spelling doaj.art-4b44e271fac64cfc9df32ef48e966fe72023-11-23T19:28:34ZengMDPI AGViruses1999-49152022-09-01149204110.3390/v14092041Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology TestsAlexandra Rak0Svetlana Donina1Yana Zabrodskaya2Larisa Rudenko3Irina Isakova-Sivak4Institute of Experimental Medicine, Saint Petersburg 197022, RussiaInstitute of Experimental Medicine, Saint Petersburg 197022, RussiaInstitute of Experimental Medicine, Saint Petersburg 197022, RussiaInstitute of Experimental Medicine, Saint Petersburg 197022, RussiaInstitute of Experimental Medicine, Saint Petersburg 197022, RussiaThe emergence of the new coronavirus SARS-CoV-2 in late 2019 led to the global pandemic COVID-19, causing a profound socioeconomic crisis. Adequate diagnostic tools need to be developed to control the ongoing spread of infection. Virus-specific humoral immunity in COVID-19 patients and those vaccinated with specific vaccines has been characterized in numerous studies, mainly using Spike protein-based serology tests. However, Spike protein and specifically its receptor-binding domain (RBD) are mutation-prone, suggesting the reduced sensitivity of the validated serology tests in detecting antibodies raised to variants of concern (VOC). The viral nucleocapsid (N) protein is more conserved compared to Spike, but little is known about cross-reactivity of the N-specific antibodies between the ancestral B.1 virus and different VOCs. Here, we generated recombinant N phosphoproteins from different SARS-CoV-2 strains and analyzed the magnitude of N-specific antibodies in COVID-19 convalescent sera using an in-house N-based ELISA test system. We found a strong positive correlation in the magnitude of anti-N (B.1) antibodies and antibodies specific to various VOCs in COVID-19-recovered patients, suggesting that the N-binding antibodies are highly cross-reactive, and the most immunogenic epitopes within this protein are not under selective pressure. Overall, our study suggests that the RBD-based serology tests should be timely updated to reflect the constantly evolving nature of the SARS-CoV-2 Spike protein, whereas the validated N-based test systems can be used for the analysis of sera from COVID-19 patients regardless of the strain that caused the infection.https://www.mdpi.com/1999-4915/14/9/2041COVID-19SARS-CoV-2nucleocapsid phosphoproteinrecombinant proteincross-reactivityantibody tests
spellingShingle Alexandra Rak
Svetlana Donina
Yana Zabrodskaya
Larisa Rudenko
Irina Isakova-Sivak
Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
Viruses
COVID-19
SARS-CoV-2
nucleocapsid phosphoprotein
recombinant protein
cross-reactivity
antibody tests
title Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
title_full Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
title_fullStr Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
title_full_unstemmed Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
title_short Cross-Reactivity of SARS-CoV-2 Nucleocapsid-Binding Antibodies and Its Implication for COVID-19 Serology Tests
title_sort cross reactivity of sars cov 2 nucleocapsid binding antibodies and its implication for covid 19 serology tests
topic COVID-19
SARS-CoV-2
nucleocapsid phosphoprotein
recombinant protein
cross-reactivity
antibody tests
url https://www.mdpi.com/1999-4915/14/9/2041
work_keys_str_mv AT alexandrarak crossreactivityofsarscov2nucleocapsidbindingantibodiesanditsimplicationforcovid19serologytests
AT svetlanadonina crossreactivityofsarscov2nucleocapsidbindingantibodiesanditsimplicationforcovid19serologytests
AT yanazabrodskaya crossreactivityofsarscov2nucleocapsidbindingantibodiesanditsimplicationforcovid19serologytests
AT larisarudenko crossreactivityofsarscov2nucleocapsidbindingantibodiesanditsimplicationforcovid19serologytests
AT irinaisakovasivak crossreactivityofsarscov2nucleocapsidbindingantibodiesanditsimplicationforcovid19serologytests