Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States
The sweetpotato weevil, Cylas formicarius elegantulus (Summers) (Coleoptera: Brentidae), is one of the most destructive pests of sweetpotato worldwide. Genomic analyses of sweetpotato weevils can provide insights into their genetic diversity, population structure, and dispersal as well as provide in...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-08-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340923005322 |
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| author | Sharon A. Andreason Zachary Lahey Dongyan Zhao Katherine Mejia-Guerra Livy H. Williams Moira Sheehan Alvin M. Simmons Phillip A. Wadl |
| author_facet | Sharon A. Andreason Zachary Lahey Dongyan Zhao Katherine Mejia-Guerra Livy H. Williams Moira Sheehan Alvin M. Simmons Phillip A. Wadl |
| author_sort | Sharon A. Andreason |
| collection | DOAJ |
| description | The sweetpotato weevil, Cylas formicarius elegantulus (Summers) (Coleoptera: Brentidae), is one of the most destructive pests of sweetpotato worldwide. Genomic analyses of sweetpotato weevils can provide insights into their genetic diversity, population structure, and dispersal as well as provide information to support management strategies. Adult sweetpotato weevils were collected by various methods from Ipomoea batatas L. (sweetpotato) or I. coccinea L. (red morning glory) in the U.S. states of Georgia, Hawaii, South Carolina, and Texas. Genomic DNA was extracted from individual weevil specimens and sequenced using Illumina NovaSeq. A total of 181 GB of 150 base pair (bp) paired-end reads were generated for 40 specimens. Mitochondrial genomes were assembled for each specimen via reference mapping and annotated using Geneious Prime. Full mitochondrial genome sequences range from 17,141 to 17,152 bp with an average GC content of 21.8% and average coverage of 3307 × . A maximum likelihood phylogenetic analysis considering the mitochondrial protein coding genes is provided. Mitochondrial genomes and assembled reads are deposited in NCBI GenBank, providing 40 mitogenomes of C. formicarius elegantulus collected in the U.S. |
| first_indexed | 2024-03-12T15:04:16Z |
| format | Article |
| id | doaj.art-4c1339d92fbc4f0db1c0ba79d1e6287e |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-03-12T15:04:16Z |
| publishDate | 2023-08-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-4c1339d92fbc4f0db1c0ba79d1e6287e2023-08-13T04:54:18ZengElsevierData in Brief2352-34092023-08-0149109432Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United StatesSharon A. Andreason0Zachary Lahey1Dongyan Zhao2Katherine Mejia-Guerra3Livy H. Williams4Moira Sheehan5Alvin M. Simmons6Phillip A. Wadl7United States Department of Agriculture, Agricultural Research Service, U.S. Vegetable Laboratory, 2700 Savannah Hwy., Charleston, SC 29414, United States of America; Corresponding author.United States Department of Agriculture, Agricultural Research Service, U.S. Vegetable Laboratory, 2700 Savannah Hwy., Charleston, SC 29414, United States of AmericaBreeding Insight, Cornell University, 525 Tower Rd., Ithaca, NY 14853, United States of AmericaBreeding Insight, Cornell University, 525 Tower Rd., Ithaca, NY 14853, United States of AmericaUnited States Department of Agriculture, Agricultural Research Service, U.S. Vegetable Laboratory, 2700 Savannah Hwy., Charleston, SC 29414, United States of AmericaBreeding Insight, Cornell University, 525 Tower Rd., Ithaca, NY 14853, United States of AmericaUnited States Department of Agriculture, Agricultural Research Service, U.S. Vegetable Laboratory, 2700 Savannah Hwy., Charleston, SC 29414, United States of AmericaUnited States Department of Agriculture, Agricultural Research Service, U.S. Vegetable Laboratory, 2700 Savannah Hwy., Charleston, SC 29414, United States of AmericaThe sweetpotato weevil, Cylas formicarius elegantulus (Summers) (Coleoptera: Brentidae), is one of the most destructive pests of sweetpotato worldwide. Genomic analyses of sweetpotato weevils can provide insights into their genetic diversity, population structure, and dispersal as well as provide information to support management strategies. Adult sweetpotato weevils were collected by various methods from Ipomoea batatas L. (sweetpotato) or I. coccinea L. (red morning glory) in the U.S. states of Georgia, Hawaii, South Carolina, and Texas. Genomic DNA was extracted from individual weevil specimens and sequenced using Illumina NovaSeq. A total of 181 GB of 150 base pair (bp) paired-end reads were generated for 40 specimens. Mitochondrial genomes were assembled for each specimen via reference mapping and annotated using Geneious Prime. Full mitochondrial genome sequences range from 17,141 to 17,152 bp with an average GC content of 21.8% and average coverage of 3307 × . A maximum likelihood phylogenetic analysis considering the mitochondrial protein coding genes is provided. Mitochondrial genomes and assembled reads are deposited in NCBI GenBank, providing 40 mitogenomes of C. formicarius elegantulus collected in the U.S.http://www.sciencedirect.com/science/article/pii/S2352340923005322MitogenomemtDNAAssemblyAnnotationColeopteraBrentidae |
| spellingShingle | Sharon A. Andreason Zachary Lahey Dongyan Zhao Katherine Mejia-Guerra Livy H. Williams Moira Sheehan Alvin M. Simmons Phillip A. Wadl Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States Data in Brief Mitogenome mtDNA Assembly Annotation Coleoptera Brentidae |
| title | Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States |
| title_full | Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States |
| title_fullStr | Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States |
| title_full_unstemmed | Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States |
| title_short | Mitochondrial genome datasets for the sweetpotato weevil, Cylas formicarius elegantulus (Coleoptera: Brentidae), collected in the United States |
| title_sort | mitochondrial genome datasets for the sweetpotato weevil cylas formicarius elegantulus coleoptera brentidae collected in the united states |
| topic | Mitogenome mtDNA Assembly Annotation Coleoptera Brentidae |
| url | http://www.sciencedirect.com/science/article/pii/S2352340923005322 |
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