The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China
Prunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 15...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1679048 |
| _version_ | 1797639558388514816 |
|---|---|
| author | Wenquan Bao Dun Ao Tana Wuyun Tiezhu Li Lin Wang Huimin Liu |
| author_facet | Wenquan Bao Dun Ao Tana Wuyun Tiezhu Li Lin Wang Huimin Liu |
| author_sort | Wenquan Bao |
| collection | DOAJ |
| description | Prunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 158,153 bp in length. It exhibited a typical quadripartite structure comprising a large single-copy region (LSC, 86,319 bp), a small single-copy region (SSC, 19,022 bp) and a pair of inverted repeat regions (IRs, 26,406 bp each). A total of 112 genes were predicted, which included 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis indicated that P. mira was the most ancestral and basal lineage within the subgenus Amygdalus (Prunoideae subfamily), which is conform to the traditional classification. |
| first_indexed | 2024-03-11T13:19:25Z |
| format | Article |
| id | doaj.art-4c30af720d9b45cab0e0307610f21689 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:25Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-4c30af720d9b45cab0e0307610f216892023-11-03T10:38:50ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423731373310.1080/23802359.2019.16790481679048The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, ChinaWenquan Bao0Dun Ao1Tana Wuyun2Tiezhu Li3Lin Wang4Huimin Liu5Inner Mongolia Agricultural UniversityInner Mongolia Agricultural UniversityNon-timber Research and Development Center of Chinese Academy of ForestryNon-timber Research and Development Center of Chinese Academy of ForestryNon-timber Research and Development Center of Chinese Academy of ForestryNon-timber Research and Development Center of Chinese Academy of ForestryPrunus mira Koehne belonging to family Rosaceae, is an indigenous species distributed in Tibet, China. De novo assembly with low coverage whole genome sequencing data facilitated to generate the complete chloroplast (cp) genome of P. mira in this study. The genome was a circular DNA molecule with 158,153 bp in length. It exhibited a typical quadripartite structure comprising a large single-copy region (LSC, 86,319 bp), a small single-copy region (SSC, 19,022 bp) and a pair of inverted repeat regions (IRs, 26,406 bp each). A total of 112 genes were predicted, which included 78 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis indicated that P. mira was the most ancestral and basal lineage within the subgenus Amygdalus (Prunoideae subfamily), which is conform to the traditional classification.http://dx.doi.org/10.1080/23802359.2019.1679048chloroplastphylogenetic analysisprunus mira koehnewhole genome sequence |
| spellingShingle | Wenquan Bao Dun Ao Tana Wuyun Tiezhu Li Lin Wang Huimin Liu The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China Mitochondrial DNA. Part B. Resources chloroplast phylogenetic analysis prunus mira koehne whole genome sequence |
| title | The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China |
| title_full | The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China |
| title_fullStr | The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China |
| title_full_unstemmed | The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China |
| title_short | The complete chloroplast genome of Prunus mira koehne (Prunoideae, Rosaceae), a wild and indigenous peach on Tibet, China |
| title_sort | complete chloroplast genome of prunus mira koehne prunoideae rosaceae a wild and indigenous peach on tibet china |
| topic | chloroplast phylogenetic analysis prunus mira koehne whole genome sequence |
| url | http://dx.doi.org/10.1080/23802359.2019.1679048 |
| work_keys_str_mv | AT wenquanbao thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT dunao thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT tanawuyun thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT tiezhuli thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT linwang thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT huiminliu thecompletechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT wenquanbao completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT dunao completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT tanawuyun completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT tiezhuli completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT linwang completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina AT huiminliu completechloroplastgenomeofprunusmirakoehneprunoideaerosaceaeawildandindigenouspeachontibetchina |