FRAGTE2: An Enhanced Algorithm to Pre-Select Closely Related Genomes for Bacterial Species Demarcation
We previously reported on FRAGTE (hereafter termed FRAGTE1), a promising algorithm for sieving (pre-selecting genome pairs for whole-genome species demarcation). However, the overall amount of pairs sieved by FRAGTE1 is still large, requiring seriously unaffordable computing cost, especially for lar...
Main Authors: | Jiaqi Zeng, Yuxiao Wang, Ziyao Wu, Yizhuang Zhou |
---|---|
Format: | Article |
Language: | English |
Published: |
Frontiers Media S.A.
2022-05-01
|
Series: | Frontiers in Microbiology |
Subjects: | |
Online Access: | https://www.frontiersin.org/articles/10.3389/fmicb.2022.847439/full |
Similar Items
-
Defining the <i>Rhizobium leguminosarum</i> Species Complex
by: J. Peter W. Young, et al.
Published: (2021-01-01) -
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics
by: Rebecca L. Lindsey, et al.
Published: (2023-12-01) -
Phylogenomic Analyses of the Genus <i>Pseudomonas</i> Lead to the Rearrangement of Several Species and the Definition of New Genera
by: Zaki Saati-Santamaría, et al.
Published: (2021-08-01) -
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses
by: Ruochen Wu, et al.
Published: (2024-04-01) -
The Bacterial Degradation of Lignin—A Review
by: Dijana Grgas, et al.
Published: (2023-03-01)