Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis)
Here, we sequenced the complete mitochondrial genome of 29 Egyptian river buffaloes collected in two breeding stations of Egypt. The genome is 16,357–16,359 base pairs in length and contains the 37 genes found in a typical mammalian genome. The overall base composition is A: 33.1%, C: 26.6%, G: 13.9...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1852622 |
| _version_ | 1827772599381262336 |
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| author | Nouran Adel Youssef Manon Curaudeau Soheir Mohamed El Nahas Amal Ahmed Mohamed Hassan Alexandre Hassanin |
| author_facet | Nouran Adel Youssef Manon Curaudeau Soheir Mohamed El Nahas Amal Ahmed Mohamed Hassan Alexandre Hassanin |
| author_sort | Nouran Adel Youssef |
| collection | DOAJ |
| description | Here, we sequenced the complete mitochondrial genome of 29 Egyptian river buffaloes collected in two breeding stations of Egypt. The genome is 16,357–16,359 base pairs in length and contains the 37 genes found in a typical mammalian genome. The overall base composition is A: 33.1%, C: 26.6%, G: 13.9%, and T: 26.4%. Our analyses confirm that the mitochondrial genomes of swamp and river buffaloes are divergent (mean nucleotide distance = 2.3%), and show that Indian river buffalo haplotypes cluster into three haplogroups, named RB1, RB2, and RB3 (mean distance = 0.25–0.26%) and that the 24 Egyptian buffalo haplotypes fall into RB1 (with the Bangladeshi, Chinese and Italian buffalo haplotypes) and RB2. |
| first_indexed | 2024-03-11T13:11:31Z |
| format | Article |
| id | doaj.art-4e1eeac16a3b42069617ba7149bd123f |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:31Z |
| publishDate | 2021-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-4e1eeac16a3b42069617ba7149bd123f2023-11-03T14:08:17ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-01-016114514710.1080/23802359.2020.18526221852622Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis)Nouran Adel Youssef0Manon Curaudeau1Soheir Mohamed El Nahas2Amal Ahmed Mohamed Hassan3Alexandre Hassanin4Cell Biology Department, Genetic Engineering and Biotechnology Research Division, National Research CentreInstitut de SYstématique, Évolution, Biodiversité (ISYEB), Sorbonne Université, MNHN, CNRS, EPHE, UACell Biology Department, Genetic Engineering and Biotechnology Research Division, National Research CentreCell Biology Department, Genetic Engineering and Biotechnology Research Division, National Research CentreInstitut de SYstématique, Évolution, Biodiversité (ISYEB), Sorbonne Université, MNHN, CNRS, EPHE, UAHere, we sequenced the complete mitochondrial genome of 29 Egyptian river buffaloes collected in two breeding stations of Egypt. The genome is 16,357–16,359 base pairs in length and contains the 37 genes found in a typical mammalian genome. The overall base composition is A: 33.1%, C: 26.6%, G: 13.9%, and T: 26.4%. Our analyses confirm that the mitochondrial genomes of swamp and river buffaloes are divergent (mean nucleotide distance = 2.3%), and show that Indian river buffalo haplotypes cluster into three haplogroups, named RB1, RB2, and RB3 (mean distance = 0.25–0.26%) and that the 24 Egyptian buffalo haplotypes fall into RB1 (with the Bangladeshi, Chinese and Italian buffalo haplotypes) and RB2.http://dx.doi.org/10.1080/23802359.2020.1852622mtdna genomebubalus bubalisegyptbangladeshchinaindiaitalywater buffalo |
| spellingShingle | Nouran Adel Youssef Manon Curaudeau Soheir Mohamed El Nahas Amal Ahmed Mohamed Hassan Alexandre Hassanin Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) Mitochondrial DNA. Part B. Resources mtdna genome bubalus bubalis egypt bangladesh china india italy water buffalo |
| title | Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) |
| title_full | Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) |
| title_fullStr | Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) |
| title_full_unstemmed | Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) |
| title_short | Haplotype diversity in the mitochondrial genome of the Egyptian river buffalo (Bubalus bubalis) |
| title_sort | haplotype diversity in the mitochondrial genome of the egyptian river buffalo bubalus bubalis |
| topic | mtdna genome bubalus bubalis egypt bangladesh china india italy water buffalo |
| url | http://dx.doi.org/10.1080/23802359.2020.1852622 |
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