Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes

Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes

Bibliographic Details
Main Authors:	Pranvera Hiseni, Lars Snipen, Robert C. Wilson, Kari Furu, Knut Rudi
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2022-02-01
Series:	Frontiers in Microbiology
Subjects:	16S rRNA metagenome assembled genome (MAG) metagenome analyses human gut microbiome prokaryotic genome
Online Access:	https://www.frontiersin.org/articles/10.3389/fmicb.2021.822301/full

Similar Items

HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data
by: Pranvera Hiseni, et al.
Published: (2021-07-01)

Utilizing a Metagenome Assembled Genome Approach Revealed Further Insights into Microbially Mediated Heavy-Metal Resistance in Soils from a Former Nuclear Materials Production Facility
by: Navya Kommu, et al.
Published: (2024-02-01)

Open pangenome of Lactococcus lactis generated by a combination of metagenome-assembled genomes and isolate genomes
by: Yiting Zhai, et al.
Published: (2022-08-01)

Genome-Resolved Metagenomics of Nitrogen Transformations in the Switchgrass Rhizosphere Microbiome on Marginal Lands
by: Richard Allen White, et al.
Published: (2023-05-01)

Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics
by: Pranvera Hiseni, et al.
Published: (2023-01-01)

Distribution and Genomic Variation of Thermophilic Cyanobacteria in Diverse Microbial Mats at the Upper Temperature Limits of Photosynthesis
by: Eric D. Kees, et al.
Published: (2022-10-01)

Genome-Resolved Metagenomics Reveals Distinct Phosphorus Acquisition Strategies between Soil Microbiomes
by: Xingjie Wu, et al.
Published: (2022-02-01)

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
by: Vincent Somerville, et al.
Published: (2019-06-01)

Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation
by: Sandra Wiegand, et al.
Published: (2021-06-01)

Spherical: an iterative workflow for assembling metagenomic datasets
by: Thomas C. A. Hitch, et al.
Published: (2018-01-01)

Biases in genome reconstruction from metagenomic data
by: William C. Nelson, et al.
Published: (2020-10-01)

Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies
by: Xiaowen Feng, et al.
Published: (2024-04-01)

Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data
by: Gleb Goussarov, et al.
Published: (2022-06-01)

A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
by: Chao Yang, et al.
Published: (2021-01-01)

Novel Microorganisms Contribute to Biosulfidogenesis in the Deep Layer of an Acidic Pit Lake
by: Diana Ayala-Muñoz, et al.
Published: (2022-07-01)

Metabolic Overlap in Environmentally Diverse Microbial Communities
by: Eric R. Hester, et al.
Published: (2019-10-01)

Genomic characterization of two metagenome-assembled genomes of Tropheryma whipplei from China
by: Zhongdong Lv, et al.
Published: (2022-09-01)

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
by: Harriet Alexander, et al.
Published: (2023-12-01)

Hybrid, ultra-deep metagenomic sequencing enables genomic and functional characterization of low-abundance species in the human gut microbiome
by: Hao Jin, et al.
Published: (2022-12-01)

Optimizing de novo genome assembly from PCR-amplified metagenomes
by: Simon Roux, et al.
Published: (2019-05-01)

A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters
by: Clara Jégousse, et al.
Published: (2021-04-01)

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data
by: Silas Kieser, et al.
Published: (2020-06-01)

Depth drives the distribution of microbial ecological functions in the coastal western Antarctic Peninsula
by: Avishek Dutta, et al.
Published: (2023-05-01)

Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge
by: Nafi’u Abdulkadir, et al.
Published: (2023-01-01)

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes
by: Johannes Alneberg, et al.
Published: (2018-09-01)

Microbial Communities in Ferromanganese Sediments from the Northern Basin of Lake Baikal (Russia)
by: Anna Lomakina, et al.
Published: (2023-07-01)

VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
by: Josh L. Espinoza, et al.
Published: (2022-10-01)

Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa
by: Jie Zhu, et al.
Published: (2022-04-01)

Unitig level assembly graph based metagenome-assembled genome refiner (UGMAGrefiner): A tool to increase completeness and resolution of metagenome-assembled genomes
by: Baoyu Xiang, et al.
Published: (2023-01-01)

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
by: Taylor Priest, et al.
Published: (2021-06-01)

metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies
by: Senying Lai, et al.
Published: (2022-11-01)

Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms
by: Anthony Duncan, et al.
Published: (2023-04-01)

16S rRNA-based Metagenomic Analysis of Endophytic Actinomycetes Diversity from Tinospora crispa L. Miers
by: MONA PRIMANITA, et al.
Published: (2015-03-01)

16S rRNA-based Metagenomic Analysis of Endophytic Actinomycetes Diversity from Tinospora crispa L. Miers
by: MONA PRIMANITA, et al.
Published: (2015-03-01)

Metagenomic binning of PacBio HiFi data prior to assembly reveals a complete genome of Cosmopolites sordidus (Germar) (Coleopterea: Curculionidae, Dryophthorinae) the most damaging arthropod pest of bananas and plantains
by: Alfredo Rodriguez Ruiz, et al.
Published: (2023-11-01)

Microbial life in 25-m-deep boreholes in ancient permafrost illuminated by metagenomics
by: Xiaofen Wu, et al.
Published: (2023-04-01)

To Dereplicate or Not To Dereplicate?
by: Jacob T. Evans, et al.
Published: (2020-06-01)

Improving the Diagnosis of Bacterial Infections: Evaluation of 16S rRNA Nanopore Metagenomics in Culture-Negative Samples
by: Coralie Bouchiat, et al.
Published: (2022-07-01)

Benchmarking different approaches for Norovirus genome assembly in metagenome samples
by: Azahara Fuentes-Trillo, et al.
Published: (2021-11-01)

Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake
by: Keith Arora-Williams, et al.
Published: (2018-09-01)