Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis
The whole chloroplast genome of Amorphophallus konjac is determined in this study. The genome size was 161,647 bp in length, containing a large single copy region of 90k bp and a small single copy region of 20k bp, which were separated by a pair of 25,722 bp inverted repeat regions. The complete chl...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1606683 |
| _version_ | 1827773466288324608 |
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| author | Huan Hu Jianguo Liu Beilei Wang Jiaxing An Qian Wang |
| author_facet | Huan Hu Jianguo Liu Beilei Wang Jiaxing An Qian Wang |
| author_sort | Huan Hu |
| collection | DOAJ |
| description | The whole chloroplast genome of Amorphophallus konjac is determined in this study. The genome size was 161,647 bp in length, containing a large single copy region of 90k bp and a small single copy region of 20k bp, which were separated by a pair of 25,722 bp inverted repeat regions. The complete chloroplast genome contained 131 genes, including 86 coding-protein (79 PCG species), 8 rRNA (4 rRNA species), and 37 tRNA genes (30 tRNA species). Based on the phylogenetic analysis, the genus Amorphophallus, represented by A. konjac might show a close relationship with Pinellia and Colocasia by the limited data for current. These complete chloroplast genomes of A. konjac laid a good foundation for population genomics, molecular, and ecological studies of Amorphophallus. |
| first_indexed | 2024-03-11T13:22:20Z |
| format | Article |
| id | doaj.art-4ed3587a155b45e895926eff7e2df025 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:22:20Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-4ed3587a155b45e895926eff7e2df0252023-11-03T10:06:45ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411658165910.1080/23802359.2019.16066831606683Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysisHuan Hu0Jianguo Liu1Beilei Wang2Jiaxing An3Qian Wang4Zunyi Medical UniversityZunyi Medical UniversityZunyi Medical UniversityZunyi Medical UniversityZunyi Medical UniversityThe whole chloroplast genome of Amorphophallus konjac is determined in this study. The genome size was 161,647 bp in length, containing a large single copy region of 90k bp and a small single copy region of 20k bp, which were separated by a pair of 25,722 bp inverted repeat regions. The complete chloroplast genome contained 131 genes, including 86 coding-protein (79 PCG species), 8 rRNA (4 rRNA species), and 37 tRNA genes (30 tRNA species). Based on the phylogenetic analysis, the genus Amorphophallus, represented by A. konjac might show a close relationship with Pinellia and Colocasia by the limited data for current. These complete chloroplast genomes of A. konjac laid a good foundation for population genomics, molecular, and ecological studies of Amorphophallus.http://dx.doi.org/10.1080/23802359.2019.1606683amorphophallus konjacaraceaechloroplast genomephylogenetic analysis |
| spellingShingle | Huan Hu Jianguo Liu Beilei Wang Jiaxing An Qian Wang Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis Mitochondrial DNA. Part B. Resources amorphophallus konjac araceae chloroplast genome phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis |
| title_full | Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis |
| title_fullStr | Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis |
| title_short | Characterization of the complete chloroplast genome of Amorphophallus konjac (Araceae) and its phylogenetic analysis |
| title_sort | characterization of the complete chloroplast genome of amorphophallus konjac araceae and its phylogenetic analysis |
| topic | amorphophallus konjac araceae chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1606683 |
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