Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species
Heritiera angustata (Malvaceae) is an evergreen tree distributed in the Chinese provinces of Hainan and Yunnan and in Cambodia. In China, it is listed as ‘Endangered’ (EN) China Red List of Higher Plants, although it is not protected by law. The complete chloroplast (cp) genome sequence of this thre...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2018-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1422398 |
| _version_ | 1797640749117865984 |
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| author | Kun-Kun Zhao Jian-Hua Wang Ya-Cheng Cai Zhi-Xin Zhu Jordi López-Pujol Hua-Feng Wang |
| author_facet | Kun-Kun Zhao Jian-Hua Wang Ya-Cheng Cai Zhi-Xin Zhu Jordi López-Pujol Hua-Feng Wang |
| author_sort | Kun-Kun Zhao |
| collection | DOAJ |
| description | Heritiera angustata (Malvaceae) is an evergreen tree distributed in the Chinese provinces of Hainan and Yunnan and in Cambodia. In China, it is listed as ‘Endangered’ (EN) China Red List of Higher Plants, although it is not protected by law. The complete chloroplast (cp) genome sequence of this threatened species is reported in this study, based on high-throughput sequencing (Illumina). The complete cp genome is 168, 953 bp in length, containing a pair of inverted repeat regions (IRs) of 34,491 bp, a large single copy (LSC) region of 89,054 bp, and a small single copy (SSC) region of 10,917 bp. The cp genome contains 129 genes, consisting of 85 protein-coding genes, 36 tRNA genes and eight rRNA genes. The overall AT content in the cp genome of H. angustata is 63.2%. The phylogenetic analyses indicate that there is a close relationship between H. angustata and Firmiana pulcherrima. |
| first_indexed | 2024-03-11T13:36:15Z |
| format | Article |
| id | doaj.art-4ef73645e4844942a35d8247eebcf2cb |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:15Z |
| publishDate | 2018-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-4ef73645e4844942a35d8247eebcf2cb2023-11-02T15:42:59ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592018-01-013114114210.1080/23802359.2017.14223981422398Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant speciesKun-Kun Zhao0Jian-Hua Wang1Ya-Cheng Cai2Zhi-Xin Zhu3Jordi López-Pujol4Hua-Feng Wang5Institute of Tropical Agriculture and Forestry, Hainan UniversityInstitute of Tropical Agriculture and Forestry, Hainan UniversitySun Yat-Sen UniversityInstitute of Tropical Agriculture and Forestry, Hainan UniversityBotanic Institute of Barcelona (IBB-CSIC-ICUB)Institute of Tropical Agriculture and Forestry, Hainan UniversityHeritiera angustata (Malvaceae) is an evergreen tree distributed in the Chinese provinces of Hainan and Yunnan and in Cambodia. In China, it is listed as ‘Endangered’ (EN) China Red List of Higher Plants, although it is not protected by law. The complete chloroplast (cp) genome sequence of this threatened species is reported in this study, based on high-throughput sequencing (Illumina). The complete cp genome is 168, 953 bp in length, containing a pair of inverted repeat regions (IRs) of 34,491 bp, a large single copy (LSC) region of 89,054 bp, and a small single copy (SSC) region of 10,917 bp. The cp genome contains 129 genes, consisting of 85 protein-coding genes, 36 tRNA genes and eight rRNA genes. The overall AT content in the cp genome of H. angustata is 63.2%. The phylogenetic analyses indicate that there is a close relationship between H. angustata and Firmiana pulcherrima.http://dx.doi.org/10.1080/23802359.2017.1422398heritiera angustatachloroplast genomeillumina sequencingphylogenetic analysis |
| spellingShingle | Kun-Kun Zhao Jian-Hua Wang Ya-Cheng Cai Zhi-Xin Zhu Jordi López-Pujol Hua-Feng Wang Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species Mitochondrial DNA. Part B. Resources heritiera angustata chloroplast genome illumina sequencing phylogenetic analysis |
| title | Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species |
| title_full | Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species |
| title_fullStr | Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species |
| title_full_unstemmed | Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species |
| title_short | Complete chloroplast genome sequence of Heritiera angustata (Malvaceae): an endangered plant species |
| title_sort | complete chloroplast genome sequence of heritiera angustata malvaceae an endangered plant species |
| topic | heritiera angustata chloroplast genome illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1422398 |
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