The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i>
Devastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. <i>Arthrinium rasikravindrae</i> a devastating fungus is responsible for severe infections in a large number of host plants all ov...
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| Format: | Article |
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MDPI AG
2022-03-01
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| Series: | Journal of Fungi |
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| Online Access: | https://www.mdpi.com/2309-608X/8/3/255 |
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| author | Abdul Qayoom Majeedano Jie Chen Tianhui Zhu Shujiang Li Zeeshan Ghulam Nabi Gishkori Sumbul Mureed Mastoi Gang Wang |
| author_facet | Abdul Qayoom Majeedano Jie Chen Tianhui Zhu Shujiang Li Zeeshan Ghulam Nabi Gishkori Sumbul Mureed Mastoi Gang Wang |
| author_sort | Abdul Qayoom Majeedano |
| collection | DOAJ |
| description | Devastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. <i>Arthrinium rasikravindrae</i> a devastating fungus is responsible for severe infections in a large number of host plants all over the world. In the present study, we analyzed the whole genome sequence of devastating fungus <i>A. rasikravindrae</i> strain AQZ-20, using Illumina Technology from the Novogene Bio-informatics Co., Ltd. Beijing, China. To identify associated annotation results, various corresponding functional annotations databases were utilized. The genome size was 48.24 MB with an N90 (scaffolds) length of 2,184,859 bp and encoded putative genes were 11,101, respectively. In addition, we evaluated the comparative genomic analyses with 4 fungal strains of Ascomycetes. Two related species showed a strong correlation while others exhibited a weak correlation with the <i>A. rasikravindrae</i> AQZ-20 fungus. This study is a discovery of the genome-scale assembly, as well as annotation for <i>A. rasikravindrae</i>. The results obtained from the whole genome sequencing and genomic resources developed in this study will contribute significantly to genetic improvement applications against diseases caused by <i>A. rasikravindrae</i>. In addition, the phylogenetic tree, followed by genomic RNA, transcriptomic, proteomic, metabolic, as well as pathogenic data reported in current research will provide deep insight for further studies in the future. |
| first_indexed | 2024-03-09T13:42:12Z |
| format | Article |
| id | doaj.art-4f1979685e7b4e66b97fb0e949774fdf |
| institution | Directory Open Access Journal |
| issn | 2309-608X |
| language | English |
| last_indexed | 2024-03-09T13:42:12Z |
| publishDate | 2022-03-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Journal of Fungi |
| spelling | doaj.art-4f1979685e7b4e66b97fb0e949774fdf2023-11-30T21:04:50ZengMDPI AGJournal of Fungi2309-608X2022-03-018325510.3390/jof8030255The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i>Abdul Qayoom Majeedano0Jie Chen1Tianhui Zhu2Shujiang Li3Zeeshan Ghulam Nabi Gishkori4Sumbul Mureed Mastoi5Gang Wang6College of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaCollege of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaCollege of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaCollege of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaDepartment of Plant Pathology, College Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, ChinaCollege of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaCollege of Forestry, Sichuan Agricultural University, Chengdu 611130, ChinaDevastating fungi are one of the most important biotic factors associated with numerous infectious diseases not only in plants but in animals and humans too. <i>Arthrinium rasikravindrae</i> a devastating fungus is responsible for severe infections in a large number of host plants all over the world. In the present study, we analyzed the whole genome sequence of devastating fungus <i>A. rasikravindrae</i> strain AQZ-20, using Illumina Technology from the Novogene Bio-informatics Co., Ltd. Beijing, China. To identify associated annotation results, various corresponding functional annotations databases were utilized. The genome size was 48.24 MB with an N90 (scaffolds) length of 2,184,859 bp and encoded putative genes were 11,101, respectively. In addition, we evaluated the comparative genomic analyses with 4 fungal strains of Ascomycetes. Two related species showed a strong correlation while others exhibited a weak correlation with the <i>A. rasikravindrae</i> AQZ-20 fungus. This study is a discovery of the genome-scale assembly, as well as annotation for <i>A. rasikravindrae</i>. The results obtained from the whole genome sequencing and genomic resources developed in this study will contribute significantly to genetic improvement applications against diseases caused by <i>A. rasikravindrae</i>. In addition, the phylogenetic tree, followed by genomic RNA, transcriptomic, proteomic, metabolic, as well as pathogenic data reported in current research will provide deep insight for further studies in the future.https://www.mdpi.com/2309-608X/8/3/255firstreportwhole-genome sequence<i>Arthrinium rasikravindrae</i>devastatingfungus |
| spellingShingle | Abdul Qayoom Majeedano Jie Chen Tianhui Zhu Shujiang Li Zeeshan Ghulam Nabi Gishkori Sumbul Mureed Mastoi Gang Wang The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> Journal of Fungi first report whole-genome sequence <i>Arthrinium rasikravindrae</i> devastating fungus |
| title | The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> |
| title_full | The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> |
| title_fullStr | The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> |
| title_full_unstemmed | The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> |
| title_short | The First Whole Genome Sequence Discovery of the Devastating Fungus <i>Arthrinium rasikravindrae</i> |
| title_sort | first whole genome sequence discovery of the devastating fungus i arthrinium rasikravindrae i |
| topic | first report whole-genome sequence <i>Arthrinium rasikravindrae</i> devastating fungus |
| url | https://www.mdpi.com/2309-608X/8/3/255 |
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