Available cloned genes and markers for genetic improvement of biotic stress resistance in rice
Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other metho...
| Main Authors: | , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Frontiers Media S.A.
2023-09-01
|
| Series: | Frontiers in Plant Science |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fpls.2023.1247014/full |
| _version_ | 1797692724792524800 |
|---|---|
| author | Eliza Vie Simon Eliza Vie Simon Sherry Lou Hechanova Jose E. Hernandez Charng-Pei Li Adnan Tülek Eok-Keun Ahn Jirapong Jairin Il-Ryong Choi Il-Ryong Choi Raman M. Sundaram Kshirod K. Jena Sung-Ryul Kim |
| author_facet | Eliza Vie Simon Eliza Vie Simon Sherry Lou Hechanova Jose E. Hernandez Charng-Pei Li Adnan Tülek Eok-Keun Ahn Jirapong Jairin Il-Ryong Choi Il-Ryong Choi Raman M. Sundaram Kshirod K. Jena Sung-Ryul Kim |
| author_sort | Eliza Vie Simon |
| collection | DOAJ |
| description | Biotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production. |
| first_indexed | 2024-03-12T02:32:45Z |
| format | Article |
| id | doaj.art-4f8eab9da41847538f19344b89085553 |
| institution | Directory Open Access Journal |
| issn | 1664-462X |
| language | English |
| last_indexed | 2024-03-12T02:32:45Z |
| publishDate | 2023-09-01 |
| publisher | Frontiers Media S.A. |
| record_format | Article |
| series | Frontiers in Plant Science |
| spelling | doaj.art-4f8eab9da41847538f19344b890855532023-09-05T07:13:20ZengFrontiers Media S.A.Frontiers in Plant Science1664-462X2023-09-011410.3389/fpls.2023.12470141247014Available cloned genes and markers for genetic improvement of biotic stress resistance in riceEliza Vie Simon0Eliza Vie Simon1Sherry Lou Hechanova2Jose E. Hernandez3Charng-Pei Li4Adnan Tülek5Eok-Keun Ahn6Jirapong Jairin7Il-Ryong Choi8Il-Ryong Choi9Raman M. Sundaram10Kshirod K. Jena11Sung-Ryul Kim12Rice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, PhilippinesInstitute of Crop Science (ICropS), University of the Philippines Los Baños, Laguna, PhilippinesRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, PhilippinesInstitute of Crop Science (ICropS), University of the Philippines Los Baños, Laguna, PhilippinesTaiwan Agricultural Research Institute (TARI), Council of Agriculture, TaiwanTrakya Agricultural Research Institute, Edirne, TürkiyeNational Institute of Crop Science, Rural Development Administration (RDA), Republic of KoreaDivision of Rice Research and Development, Rice Department, Bangkok, ThailandRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, PhilippinesNational Institute of Crop Science, Rural Development Administration (RDA), Republic of KoreaICAR-Indian Institute of Rice Research, Rajendranagar, Hyderabad, IndiaSchool of Biotechnology, KIIT Deemed University, Bhubaneswar, Odisha, IndiaRice Breeding Innovation Department, International Rice Research Institute (IRRI), Laguna, PhilippinesBiotic stress is one of the major threats to stable rice production. Climate change affects the shifting of pest outbreaks in time and space. Genetic improvement of biotic stress resistance in rice is a cost-effective and environment-friendly way to control diseases and pests compared to other methods such as chemical spraying. Fast deployment of the available and suitable genes/alleles in local elite varieties through marker-assisted selection (MAS) is crucial for stable high-yield rice production. In this review, we focused on consolidating all the available cloned genes/alleles conferring resistance against rice pathogens (virus, bacteria, and fungus) and insect pests, the corresponding donor materials, and the DNA markers linked to the identified genes. To date, 48 genes (independent loci) have been cloned for only major biotic stresses: seven genes for brown planthopper (BPH), 23 for blast, 13 for bacterial blight, and five for viruses. Physical locations of the 48 genes were graphically mapped on the 12 rice chromosomes so that breeders can easily find the locations of the target genes and distances among all the biotic stress resistance genes and any other target trait genes. For efficient use of the cloned genes, we collected all the publically available DNA markers (~500 markers) linked to the identified genes. In case of no available cloned genes yet for the other biotic stresses, we provided brief information such as donor germplasm, quantitative trait loci (QTLs), and the related papers. All the information described in this review can contribute to the fast genetic improvement of biotic stress resistance in rice for stable high-yield rice production.https://www.frontiersin.org/articles/10.3389/fpls.2023.1247014/fullbiotic stressmarker-assisted selectionbrown planthopperblastbacterial blightmarker |
| spellingShingle | Eliza Vie Simon Eliza Vie Simon Sherry Lou Hechanova Jose E. Hernandez Charng-Pei Li Adnan Tülek Eok-Keun Ahn Jirapong Jairin Il-Ryong Choi Il-Ryong Choi Raman M. Sundaram Kshirod K. Jena Sung-Ryul Kim Available cloned genes and markers for genetic improvement of biotic stress resistance in rice Frontiers in Plant Science biotic stress marker-assisted selection brown planthopper blast bacterial blight marker |
| title | Available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| title_full | Available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| title_fullStr | Available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| title_full_unstemmed | Available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| title_short | Available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| title_sort | available cloned genes and markers for genetic improvement of biotic stress resistance in rice |
| topic | biotic stress marker-assisted selection brown planthopper blast bacterial blight marker |
| url | https://www.frontiersin.org/articles/10.3389/fpls.2023.1247014/full |
| work_keys_str_mv | AT elizaviesimon availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT elizaviesimon availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT sherrylouhechanova availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT joseehernandez availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT charngpeili availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT adnantulek availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT eokkeunahn availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT jirapongjairin availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT ilryongchoi availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT ilryongchoi availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT ramanmsundaram availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT kshirodkjena availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice AT sungryulkim availableclonedgenesandmarkersforgeneticimprovementofbioticstressresistanceinrice |