The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis
The complete chloroplast genome (cp) of Ocimum tenuiflorum L. subtype Krishna Tulsi was sequenced and assembled using Illumina paired-end sequencing data. The cp genome is 151,758 bp in length, including a large single copy (LSC) region of 82,794 bp, a small single-copy region (SSC) of 17,592 bp, an...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-08-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1951133 |
| _version_ | 1827772366945517568 |
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| author | NM Kavya Raju Balaji Tanuja Madasamy Parani Palanisamy Senthilkumar |
| author_facet | NM Kavya Raju Balaji Tanuja Madasamy Parani Palanisamy Senthilkumar |
| author_sort | NM Kavya |
| collection | DOAJ |
| description | The complete chloroplast genome (cp) of Ocimum tenuiflorum L. subtype Krishna Tulsi was sequenced and assembled using Illumina paired-end sequencing data. The cp genome is 151,758 bp in length, including a large single copy (LSC) region of 82,794 bp, a small single-copy region (SSC) of 17,592 bp, and a pair of inverted repeated (IR) region of 25,686 bp. The cp genome of Krishna Tulsi encodes 129 genes, including 90 protein-coding, 31 transfer RNA (tRNA), and eight ribosomal RNA (rRNA) genes. While the overall GC content was 37.9%, it is 36.0%, 31.8%, and 43.1% in the LSC, SSC, and IR regions, respectively. Phylogenetic analysis based on chloroplast genome sequences of 17 species from Lamiaceae revealed that O. tenuiflorum subtype Krishna Tulsi is clustered with other Ocimum species, and forms a clade with genera from family Lamiaceae. |
| first_indexed | 2024-03-11T13:08:29Z |
| format | Article |
| id | doaj.art-4fcb6b07d8774e7aab27622e52fa808e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:29Z |
| publishDate | 2021-08-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-4fcb6b07d8774e7aab27622e52fa808e2023-11-03T14:28:28ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-08-01682358236010.1080/23802359.2021.19511331951133The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysisNM Kavya0Raju Balaji1Tanuja2Madasamy Parani3Palanisamy Senthilkumar4Center for DNA Barcoding, Department of Genetic Engineering, SRM Institute of Science and TechnologyCenter for DNA Barcoding, Department of Genetic Engineering, SRM Institute of Science and TechnologyCenter for DNA Barcoding, Department of Genetic Engineering, SRM Institute of Science and TechnologyCenter for DNA Barcoding, Department of Genetic Engineering, SRM Institute of Science and TechnologyCenter for DNA Barcoding, Department of Genetic Engineering, SRM Institute of Science and TechnologyThe complete chloroplast genome (cp) of Ocimum tenuiflorum L. subtype Krishna Tulsi was sequenced and assembled using Illumina paired-end sequencing data. The cp genome is 151,758 bp in length, including a large single copy (LSC) region of 82,794 bp, a small single-copy region (SSC) of 17,592 bp, and a pair of inverted repeated (IR) region of 25,686 bp. The cp genome of Krishna Tulsi encodes 129 genes, including 90 protein-coding, 31 transfer RNA (tRNA), and eight ribosomal RNA (rRNA) genes. While the overall GC content was 37.9%, it is 36.0%, 31.8%, and 43.1% in the LSC, SSC, and IR regions, respectively. Phylogenetic analysis based on chloroplast genome sequences of 17 species from Lamiaceae revealed that O. tenuiflorum subtype Krishna Tulsi is clustered with other Ocimum species, and forms a clade with genera from family Lamiaceae.http://dx.doi.org/10.1080/23802359.2021.1951133complete chloroplast genomelamiaceaeocimum tenuiflorumkrishna tulsiphylogenetic analysis |
| spellingShingle | NM Kavya Raju Balaji Tanuja Madasamy Parani Palanisamy Senthilkumar The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis Mitochondrial DNA. Part B. Resources complete chloroplast genome lamiaceae ocimum tenuiflorum krishna tulsi phylogenetic analysis |
| title | The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis |
| title_full | The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis |
| title_fullStr | The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis |
| title_full_unstemmed | The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis |
| title_short | The complete chloroplast genome of Ocimum tenuiflorum L. subtype Krishna Tulsi and its phylogenetic analysis |
| title_sort | complete chloroplast genome of ocimum tenuiflorum l subtype krishna tulsi and its phylogenetic analysis |
| topic | complete chloroplast genome lamiaceae ocimum tenuiflorum krishna tulsi phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1951133 |
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