Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae)
Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1681324 |
| _version_ | 1827773189902565376 |
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| author | Fengjiao Zhang Haiying Tong Hong Yang Tao Wang Weibing Zhuang Xiaochun Shu Zhong Wang |
| author_facet | Fengjiao Zhang Haiying Tong Hong Yang Tao Wang Weibing Zhuang Xiaochun Shu Zhong Wang |
| author_sort | Fengjiao Zhang |
| collection | DOAJ |
| description | Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and bioinformatics analysis. As a result, the whole cp genome size is 158,484 bp, including two inverted repeat (IR) regions of 26,765 bp, large single-copy region (LSC) of 86,458 bp and small single-copy region (SSC) of 18,496 bp. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and eight rRNA genes. Phylogenomic analysis was carried out using complete cp genome of 18 species in five families, supporting the closer relationship between L. longituba and L. squamigera than L. radiata and L. sprengeri in Amaryllidaceae. |
| first_indexed | 2024-03-11T13:19:26Z |
| format | Article |
| id | doaj.art-5005c617c1b64f4dbb3fda068e162a4d |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:26Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5005c617c1b64f4dbb3fda068e162a4d2023-11-03T10:38:50ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423782378310.1080/23802359.2019.16813241681324Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae)Fengjiao Zhang0Haiying Tong1Hong Yang2Tao Wang3Weibing Zhuang4Xiaochun Shu5Zhong Wang6Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Jiangsu Province and Chinese Academy of Sciences (Nanjing Botanical Garden Mem. Sun Yat-Sen)Lycoris longituba is a species in the Amaryllidaceae with high ornamental and medicinal value. It is also an endangered species in East China due to the narrow distribution. Here, we assembled and characterised the complete chloroplast (cp) genome of this species using high throughput sequencing and bioinformatics analysis. As a result, the whole cp genome size is 158,484 bp, including two inverted repeat (IR) regions of 26,765 bp, large single-copy region (LSC) of 86,458 bp and small single-copy region (SSC) of 18,496 bp. A total of 137 genes were identified, including 87 protein-coding genes, 42 tRNA genes, and eight rRNA genes. Phylogenomic analysis was carried out using complete cp genome of 18 species in five families, supporting the closer relationship between L. longituba and L. squamigera than L. radiata and L. sprengeri in Amaryllidaceae.http://dx.doi.org/10.1080/23802359.2019.1681324lycoris longitubacomplete chloroplast genomephylogenetic analysis |
| spellingShingle | Fengjiao Zhang Haiying Tong Hong Yang Tao Wang Weibing Zhuang Xiaochun Shu Zhong Wang Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) Mitochondrial DNA. Part B. Resources lycoris longituba complete chloroplast genome phylogenetic analysis |
| title | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
| title_full | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
| title_fullStr | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
| title_full_unstemmed | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
| title_short | Characterisation of the complete chloroplast genome of Lycoris longituba (Amaryllidaceae) |
| title_sort | characterisation of the complete chloroplast genome of lycoris longituba amaryllidaceae |
| topic | lycoris longituba complete chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1681324 |
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