Biodiversity of gut microorganisms in aquacultured African catfish
The article examines the intestinal microbiome of young and adult catfish Clarias gariepinus raised under aquaculture conditions. Genomic DNA was isolated from the large intestine of fish. The study was conducted using the 16S Metagenomics protocol, and the library pool was sequenced on Illumina MiS...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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EDP Sciences
2023-01-01
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| Series: | E3S Web of Conferences |
| Online Access: | https://www.e3s-conferences.org/articles/e3sconf/pdf/2023/100/e3sconf_eeste2023_01039.pdf |
| _version_ | 1827373129111961600 |
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| author | Skvortsova Elena Filinskaya Oksana Postrash Irina Bushkareva Anna Mostofina Alexandra |
| author_facet | Skvortsova Elena Filinskaya Oksana Postrash Irina Bushkareva Anna Mostofina Alexandra |
| author_sort | Skvortsova Elena |
| collection | DOAJ |
| description | The article examines the intestinal microbiome of young and adult catfish Clarias gariepinus raised under aquaculture conditions. Genomic DNA was isolated from the large intestine of fish. The study was conducted using the 16S Metagenomics protocol, and the library pool was sequenced on Illumina MiSeq. The microbiota is characterized by a diverse set of both aerobic and anaerobic bacteria, the qualitative and quantitative composition of which is strictly individual for each individual. The microbiota of young catfish consisted mainly of opportunistic gram-negative bacteria Pseudomonas, as well as gram-negative anaerobic bacteria Cetobacterium somerae. In adult catfish, higher biodiversity and the appearance of opportunistic gram-positive bacteria of the genus Streptococcus in the dominant genera were revealed; the species Propionibacterium acnes was also common. The study results indicate that the diversity of the gut microbiome of the catfish Clarias gariepinus increases over time. |
| first_indexed | 2024-03-08T11:12:16Z |
| format | Article |
| id | doaj.art-50daf5c9bcab4bf08fcc236921102430 |
| institution | Directory Open Access Journal |
| issn | 2267-1242 |
| language | English |
| last_indexed | 2024-03-08T11:12:16Z |
| publishDate | 2023-01-01 |
| publisher | EDP Sciences |
| record_format | Article |
| series | E3S Web of Conferences |
| spelling | doaj.art-50daf5c9bcab4bf08fcc2369211024302024-01-26T10:41:30ZengEDP SciencesE3S Web of Conferences2267-12422023-01-014630103910.1051/e3sconf/202346301039e3sconf_eeste2023_01039Biodiversity of gut microorganisms in aquacultured African catfishSkvortsova Elena0Filinskaya Oksana1Postrash Irina2Bushkareva Anna3Mostofina Alexandra4Yaroslavl State Agricultural UniversityYaroslavl State Agricultural UniversityVitebsk the Order of “the Badge of Honor” State Academy of Veterinary MedicineYaroslavl State Agricultural UniversityYaroslavl State Agricultural UniversityThe article examines the intestinal microbiome of young and adult catfish Clarias gariepinus raised under aquaculture conditions. Genomic DNA was isolated from the large intestine of fish. The study was conducted using the 16S Metagenomics protocol, and the library pool was sequenced on Illumina MiSeq. The microbiota is characterized by a diverse set of both aerobic and anaerobic bacteria, the qualitative and quantitative composition of which is strictly individual for each individual. The microbiota of young catfish consisted mainly of opportunistic gram-negative bacteria Pseudomonas, as well as gram-negative anaerobic bacteria Cetobacterium somerae. In adult catfish, higher biodiversity and the appearance of opportunistic gram-positive bacteria of the genus Streptococcus in the dominant genera were revealed; the species Propionibacterium acnes was also common. The study results indicate that the diversity of the gut microbiome of the catfish Clarias gariepinus increases over time.https://www.e3s-conferences.org/articles/e3sconf/pdf/2023/100/e3sconf_eeste2023_01039.pdf |
| spellingShingle | Skvortsova Elena Filinskaya Oksana Postrash Irina Bushkareva Anna Mostofina Alexandra Biodiversity of gut microorganisms in aquacultured African catfish E3S Web of Conferences |
| title | Biodiversity of gut microorganisms in aquacultured African catfish |
| title_full | Biodiversity of gut microorganisms in aquacultured African catfish |
| title_fullStr | Biodiversity of gut microorganisms in aquacultured African catfish |
| title_full_unstemmed | Biodiversity of gut microorganisms in aquacultured African catfish |
| title_short | Biodiversity of gut microorganisms in aquacultured African catfish |
| title_sort | biodiversity of gut microorganisms in aquacultured african catfish |
| url | https://www.e3s-conferences.org/articles/e3sconf/pdf/2023/100/e3sconf_eeste2023_01039.pdf |
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