Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure

Antibiotic resistance is a public health problem of growing concern. Animal manure application to soil is considered to be a main cause of the propagation and dissemination of antibiotic residues, antibiotic-resistant bacteria (ARB), and antibiotic resistance genes (ARGs) in the soil-water system. I...

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Main Authors: Alice Checcucci, Paolo Trevisi, Diana Luise, Monica Modesto, Sonia Blasioli, Ilaria Braschi, Paola Mattarelli
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-07-01
Series:Frontiers in Microbiology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2020.01416/full
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author Alice Checcucci
Paolo Trevisi
Diana Luise
Monica Modesto
Sonia Blasioli
Ilaria Braschi
Paola Mattarelli
author_facet Alice Checcucci
Paolo Trevisi
Diana Luise
Monica Modesto
Sonia Blasioli
Ilaria Braschi
Paola Mattarelli
author_sort Alice Checcucci
collection DOAJ
description Antibiotic resistance is a public health problem of growing concern. Animal manure application to soil is considered to be a main cause of the propagation and dissemination of antibiotic residues, antibiotic-resistant bacteria (ARB), and antibiotic resistance genes (ARGs) in the soil-water system. In recent decades, studies on the impact of antibiotic-contaminated manure on soil microbiomes have increased exponentially, in particular for taxonomical diversity and ARGs’ diffusion. Antibiotic resistance genes are often located on mobile genetic elements (MGEs). Horizontal transfer of MGEs toward a broad range of bacteria (pathogens and human commensals included) has been identified as the main cause for their persistence and dissemination. Chemical and bio-sanitizing treatments reduce the antibiotic load and ARB. Nevertheless, effects of these treatments on the persistence of resistance genes must be carefully considered. This review analyzed the most recent research on antibiotic and ARG environmental dissemination conveyed by livestock waste. Strategies to control ARG dissemination and antibiotic persistence were reviewed with the aim to identify methods for monitoring DNA transferability and environmental conditions promoting such diffusion.
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spelling doaj.art-50e1b99cf6974ae8b1126e5b86aacd242022-12-21T23:57:55ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2020-07-011110.3389/fmicb.2020.01416536406Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock ManureAlice CheccucciPaolo TrevisiDiana LuiseMonica ModestoSonia BlasioliIlaria BraschiPaola MattarelliAntibiotic resistance is a public health problem of growing concern. Animal manure application to soil is considered to be a main cause of the propagation and dissemination of antibiotic residues, antibiotic-resistant bacteria (ARB), and antibiotic resistance genes (ARGs) in the soil-water system. In recent decades, studies on the impact of antibiotic-contaminated manure on soil microbiomes have increased exponentially, in particular for taxonomical diversity and ARGs’ diffusion. Antibiotic resistance genes are often located on mobile genetic elements (MGEs). Horizontal transfer of MGEs toward a broad range of bacteria (pathogens and human commensals included) has been identified as the main cause for their persistence and dissemination. Chemical and bio-sanitizing treatments reduce the antibiotic load and ARB. Nevertheless, effects of these treatments on the persistence of resistance genes must be carefully considered. This review analyzed the most recent research on antibiotic and ARG environmental dissemination conveyed by livestock waste. Strategies to control ARG dissemination and antibiotic persistence were reviewed with the aim to identify methods for monitoring DNA transferability and environmental conditions promoting such diffusion.https://www.frontiersin.org/article/10.3389/fmicb.2020.01416/fullveterinary antibioticsanimal manureantibiotic resistance genescrop soilsantimicrobial resistance
spellingShingle Alice Checcucci
Paolo Trevisi
Diana Luise
Monica Modesto
Sonia Blasioli
Ilaria Braschi
Paola Mattarelli
Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
Frontiers in Microbiology
veterinary antibiotics
animal manure
antibiotic resistance genes
crop soils
antimicrobial resistance
title Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
title_full Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
title_fullStr Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
title_full_unstemmed Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
title_short Exploring the Animal Waste Resistome: The Spread of Antimicrobial Resistance Genes Through the Use of Livestock Manure
title_sort exploring the animal waste resistome the spread of antimicrobial resistance genes through the use of livestock manure
topic veterinary antibiotics
animal manure
antibiotic resistance genes
crop soils
antimicrobial resistance
url https://www.frontiersin.org/article/10.3389/fmicb.2020.01416/full
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