The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae)
Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing dat...
| Main Authors: | , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2017-12-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1361356 |
| _version_ | 1827774357325217792 |
|---|---|
| author | Shu Yang Zhezhi Wang |
| author_facet | Shu Yang Zhezhi Wang |
| author_sort | Shu Yang |
| collection | DOAJ |
| description | Chloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 156,670 bp in size and comprises a pair of inverted repeat (IR) regions of 26,995 bp each, a large single-copy (LSC) region of 84,907 bp and a small single-copy (SSC) region of 17,773 bp. The total GC content is 36.5%, while the corresponding values of the LSC, SSC and IR region are 34.2%, 29.7% and 42.3%, respectively. The chloroplast genome contains 140 genes, including 94 protein-coding genes. The phylogenetic analysis showed a strong sister relationship with Raphanus sativus in Brassicaceae. These findings provide a foundation for further investigation of cp genome evolution in I. indigotica and other higher plants. |
| first_indexed | 2024-03-11T13:36:16Z |
| format | Article |
| id | doaj.art-5118fb04fcbf405fa09fde6729d19cd7 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:16Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5118fb04fcbf405fa09fde6729d19cd72023-11-02T15:42:57ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012251451510.1080/23802359.2017.13613561361356The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae)Shu Yang0Zhezhi Wang1National Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences, Shaanxi Normal UniversityNational Engineering Laboratory for Resource Development of Endangered Crude Drugs in Northwest China, College of Life Sciences, Shaanxi Normal UniversityChloroplast (cp) genome sequences provide a valuable source for phylogenetic analysis. It becomes a popular useful tool for population and phylogeny in recently report. Here, the complete chloroplast genome of the Isatis indigotica has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 156,670 bp in size and comprises a pair of inverted repeat (IR) regions of 26,995 bp each, a large single-copy (LSC) region of 84,907 bp and a small single-copy (SSC) region of 17,773 bp. The total GC content is 36.5%, while the corresponding values of the LSC, SSC and IR region are 34.2%, 29.7% and 42.3%, respectively. The chloroplast genome contains 140 genes, including 94 protein-coding genes. The phylogenetic analysis showed a strong sister relationship with Raphanus sativus in Brassicaceae. These findings provide a foundation for further investigation of cp genome evolution in I. indigotica and other higher plants.http://dx.doi.org/10.1080/23802359.2017.1361356isatis indigoticaillumina sequencingchloroplast genomemitobim |
| spellingShingle | Shu Yang Zhezhi Wang The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) Mitochondrial DNA. Part B. Resources isatis indigotica illumina sequencing chloroplast genome mitobim |
| title | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
| title_full | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
| title_fullStr | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
| title_short | The complete chloroplast genome sequence of the medicinal and economic plant woad Isatis indigotica (Brassicaceae) |
| title_sort | complete chloroplast genome sequence of the medicinal and economic plant woad isatis indigotica brassicaceae |
| topic | isatis indigotica illumina sequencing chloroplast genome mitobim |
| url | http://dx.doi.org/10.1080/23802359.2017.1361356 |
| work_keys_str_mv | AT shuyang thecompletechloroplastgenomesequenceofthemedicinalandeconomicplantwoadisatisindigoticabrassicaceae AT zhezhiwang thecompletechloroplastgenomesequenceofthemedicinalandeconomicplantwoadisatisindigoticabrassicaceae AT shuyang completechloroplastgenomesequenceofthemedicinalandeconomicplantwoadisatisindigoticabrassicaceae AT zhezhiwang completechloroplastgenomesequenceofthemedicinalandeconomicplantwoadisatisindigoticabrassicaceae |