The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis
Abstract Integrative analysis of microbiome and metabolome data obtained from human fecal samples is a promising avenue for better understanding the interplay between bacteria and metabolites in the human gut, in both health and disease. However, acquiring, processing, and unifying such datasets fro...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2022-10-01
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| Series: | npj Biofilms and Microbiomes |
| Online Access: | https://doi.org/10.1038/s41522-022-00345-5 |
| _version_ | 1828723407038971904 |
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| author | Efrat Muller Yadid M. Algavi Elhanan Borenstein |
| author_facet | Efrat Muller Yadid M. Algavi Elhanan Borenstein |
| author_sort | Efrat Muller |
| collection | DOAJ |
| description | Abstract Integrative analysis of microbiome and metabolome data obtained from human fecal samples is a promising avenue for better understanding the interplay between bacteria and metabolites in the human gut, in both health and disease. However, acquiring, processing, and unifying such datasets from multiple sources is a daunting and challenging task. Here we present a publicly available, simple-to-use, curated dataset collection of paired fecal microbiome-metabolome data from multiple cohorts. This data resource allows researchers to easily obtain multiple fully processed and integrated microbiome-metabolome datasets, facilitating the discovery of universal microbe-metabolite links, benchmark various microbiome-metabolome integration tools, and compare newly identified microbe-metabolite findings to other published datasets. |
| first_indexed | 2024-04-12T12:49:30Z |
| format | Article |
| id | doaj.art-523531e732f9481182e629ba47ad84ed |
| institution | Directory Open Access Journal |
| issn | 2055-5008 |
| language | English |
| last_indexed | 2024-04-12T12:49:30Z |
| publishDate | 2022-10-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | npj Biofilms and Microbiomes |
| spelling | doaj.art-523531e732f9481182e629ba47ad84ed2022-12-22T03:32:31ZengNature Portfolionpj Biofilms and Microbiomes2055-50082022-10-01811710.1038/s41522-022-00345-5The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysisEfrat Muller0Yadid M. Algavi1Elhanan Borenstein2Blavatnik School of Computer Science, Tel Aviv UniversitySackler Faculty of Medicine, Tel Aviv UniversityBlavatnik School of Computer Science, Tel Aviv UniversityAbstract Integrative analysis of microbiome and metabolome data obtained from human fecal samples is a promising avenue for better understanding the interplay between bacteria and metabolites in the human gut, in both health and disease. However, acquiring, processing, and unifying such datasets from multiple sources is a daunting and challenging task. Here we present a publicly available, simple-to-use, curated dataset collection of paired fecal microbiome-metabolome data from multiple cohorts. This data resource allows researchers to easily obtain multiple fully processed and integrated microbiome-metabolome datasets, facilitating the discovery of universal microbe-metabolite links, benchmark various microbiome-metabolome integration tools, and compare newly identified microbe-metabolite findings to other published datasets.https://doi.org/10.1038/s41522-022-00345-5 |
| spellingShingle | Efrat Muller Yadid M. Algavi Elhanan Borenstein The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis npj Biofilms and Microbiomes |
| title | The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis |
| title_full | The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis |
| title_fullStr | The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis |
| title_full_unstemmed | The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis |
| title_short | The gut microbiome-metabolome dataset collection: a curated resource for integrative meta-analysis |
| title_sort | gut microbiome metabolome dataset collection a curated resource for integrative meta analysis |
| url | https://doi.org/10.1038/s41522-022-00345-5 |
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