The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China
Allium ovalifolium var. leuconeurum is an endemic plant in Southwest China. The complete chloroplast genome sequence of A. ovalifolium var. leuconeurum was generated by de novo assembly using high-throughput sequencing. The length of chloroplast genome was 153,635 bp in length, containing a large-si...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1602009 |
| _version_ | 1797639849624207360 |
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| author | Kuo Sun Jian He Qiuhong Xiang Xinrui Wang Wen-Bin Guan Liangcheng Zhao |
| author_facet | Kuo Sun Jian He Qiuhong Xiang Xinrui Wang Wen-Bin Guan Liangcheng Zhao |
| author_sort | Kuo Sun |
| collection | DOAJ |
| description | Allium ovalifolium var. leuconeurum is an endemic plant in Southwest China. The complete chloroplast genome sequence of A. ovalifolium var. leuconeurum was generated by de novo assembly using high-throughput sequencing. The length of chloroplast genome was 153,635 bp in length, containing a large-single copy region (LSC) of 82,693 bp, a small-single copy region (SSC) of 17,932 bp, and a pair of inverted repeats (IRa and IRb) regions of 26,505 bp. The genome contains 132 genes, including 86 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Phylogenetic analysis with the reported chloroplast sequences shows that A. ovalifolium var. leuconeurum is more closely related to Allium prattii, both of which belong to the Sect. Anguinum. |
| first_indexed | 2024-03-11T13:23:30Z |
| format | Article |
| id | doaj.art-527448d1edf745a3a8c09f097bcddc8a |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:23:30Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-527448d1edf745a3a8c09f097bcddc8a2023-11-03T10:06:44ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-01411681168210.1080/23802359.2019.16020091602009The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest ChinaKuo Sun0Jian He1Qiuhong Xiang2Xinrui Wang3Wen-Bin Guan4Liangcheng Zhao5Beijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityBeijing Forestry UniversityAllium ovalifolium var. leuconeurum is an endemic plant in Southwest China. The complete chloroplast genome sequence of A. ovalifolium var. leuconeurum was generated by de novo assembly using high-throughput sequencing. The length of chloroplast genome was 153,635 bp in length, containing a large-single copy region (LSC) of 82,693 bp, a small-single copy region (SSC) of 17,932 bp, and a pair of inverted repeats (IRa and IRb) regions of 26,505 bp. The genome contains 132 genes, including 86 protein-coding genes, 8 rRNA genes, and 38 tRNA genes. Phylogenetic analysis with the reported chloroplast sequences shows that A. ovalifolium var. leuconeurum is more closely related to Allium prattii, both of which belong to the Sect. Anguinum.http://dx.doi.org/10.1080/23802359.2019.1602009chloroplast genomephylogenetic analysisalliumamaryllidaceae |
| spellingShingle | Kuo Sun Jian He Qiuhong Xiang Xinrui Wang Wen-Bin Guan Liangcheng Zhao The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China Mitochondrial DNA. Part B. Resources chloroplast genome phylogenetic analysis allium amaryllidaceae |
| title | The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China |
| title_full | The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China |
| title_fullStr | The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China |
| title_full_unstemmed | The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China |
| title_short | The complete chloroplast genome of Allium ovalifolium var. leuconeurum, an endemic plant in Southwest China |
| title_sort | complete chloroplast genome of allium ovalifolium var leuconeurum an endemic plant in southwest china |
| topic | chloroplast genome phylogenetic analysis allium amaryllidaceae |
| url | http://dx.doi.org/10.1080/23802359.2019.1602009 |
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