Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis
The complete mitogenome sequence of Eothenomys eleusis Thomas 1911 was determined using PCR. A circular double-stranded structure makes up the mitochondrial genome of E. eleusis. The complete length of the mitochondrial genome is 16,419 bp. The mitochondrial genome of E. eleusis included 13 protein-...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2023-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2023.2197087 |
| _version_ | 1797638499035250688 |
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| author | Liu Zhu Zhong-Dan Bi Hong-An Qian Xiu-Feng Mei Jing-Yu Zhao Xin-Xu Zhao Huan Chen Jun-Sheng Zhang Zhong-Wan Piao |
| author_facet | Liu Zhu Zhong-Dan Bi Hong-An Qian Xiu-Feng Mei Jing-Yu Zhao Xin-Xu Zhao Huan Chen Jun-Sheng Zhang Zhong-Wan Piao |
| author_sort | Liu Zhu |
| collection | DOAJ |
| description | The complete mitogenome sequence of Eothenomys eleusis Thomas 1911 was determined using PCR. A circular double-stranded structure makes up the mitochondrial genome of E. eleusis. The complete length of the mitochondrial genome is 16,419 bp. The mitochondrial genome of E. eleusis included 13 protein-coding genes, 1 control region, 22 tRNA genes, 2 rRNA genes and 1 origin of L strand replication. The total base composition of E. eleusis mitochondrial genome was A (32.6%), T (26.3%), G (13.6%) and C (27.5%). We found significant A-T skew in base composition, especially in control regions and protein-coding genes. E. eleusis was supported by bootstrap values of 100%. This study verifies the evolutionary status of E. eleusis in Myodini tribe of Cricetidae at the molecular level. The mitochondrial genome would be a significant supplement for the E. eleusis genetic background. |
| first_indexed | 2024-03-11T13:04:04Z |
| format | Article |
| id | doaj.art-5281a3ba41434efd8b1f07498af7c0b9 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:04:04Z |
| publishDate | 2023-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5281a3ba41434efd8b1f07498af7c0b92023-11-03T14:44:07ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592023-04-018449349610.1080/23802359.2023.21970872197087Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysisLiu Zhu0Zhong-Dan Bi1Hong-An Qian2Xiu-Feng Mei3Jing-Yu Zhao4Xin-Xu Zhao5Huan Chen6Jun-Sheng Zhang7Zhong-Wan Piao8College of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityCollege of Life Science and Technology, Mudanjiang Normal UniversityThe complete mitogenome sequence of Eothenomys eleusis Thomas 1911 was determined using PCR. A circular double-stranded structure makes up the mitochondrial genome of E. eleusis. The complete length of the mitochondrial genome is 16,419 bp. The mitochondrial genome of E. eleusis included 13 protein-coding genes, 1 control region, 22 tRNA genes, 2 rRNA genes and 1 origin of L strand replication. The total base composition of E. eleusis mitochondrial genome was A (32.6%), T (26.3%), G (13.6%) and C (27.5%). We found significant A-T skew in base composition, especially in control regions and protein-coding genes. E. eleusis was supported by bootstrap values of 100%. This study verifies the evolutionary status of E. eleusis in Myodini tribe of Cricetidae at the molecular level. The mitochondrial genome would be a significant supplement for the E. eleusis genetic background.http://dx.doi.org/10.1080/23802359.2023.2197087mitogenomephylogenetic treeseothenomys eleusi |
| spellingShingle | Liu Zhu Zhong-Dan Bi Hong-An Qian Xiu-Feng Mei Jing-Yu Zhao Xin-Xu Zhao Huan Chen Jun-Sheng Zhang Zhong-Wan Piao Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis Mitochondrial DNA. Part B. Resources mitogenome phylogenetic trees eothenomys eleusi |
| title | Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis |
| title_full | Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis |
| title_fullStr | Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis |
| title_full_unstemmed | Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis |
| title_short | Sequencing and analysis of the complete mitochondrial genome of Eothenomys eleusis Thomas 1911 from China and its phylogenetic analysis |
| title_sort | sequencing and analysis of the complete mitochondrial genome of eothenomys eleusis thomas 1911 from china and its phylogenetic analysis |
| topic | mitogenome phylogenetic trees eothenomys eleusi |
| url | http://dx.doi.org/10.1080/23802359.2023.2197087 |
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