The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)
Habenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeat...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-06-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2080016 |
| _version_ | 1827772234108764160 |
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| author | Jin Zhang Yishan Yang Jianmin Tang Yajin Luo Huqiang Lv Shengfeng Chai |
| author_facet | Jin Zhang Yishan Yang Jianmin Tang Yajin Luo Huqiang Lv Shengfeng Chai |
| author_sort | Jin Zhang |
| collection | DOAJ |
| description | Habenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeats (IRs) regions of 26,339 bp each, a large single-copy (LSC) region of 83,963 bp and a small single-copy (SSC) region of 17,041 bp. The cp genome encoded 133 genes, including 87 protein-coding genes (PCG), eight rRNA genes, and 38 tRNA genes. The maximum-likelihood phylogenetic analysis based on 12 cp genomes showed that H. dentata was sister to Habenaria chejuensis and Habenaria ciliolaris. This work will be valuable for genetic and phylogenetic studies on H. dentata. |
| first_indexed | 2024-03-11T13:05:27Z |
| format | Article |
| id | doaj.art-530f0750d5f44f99a66cfcb87f966cc1 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:27Z |
| publishDate | 2022-06-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-530f0750d5f44f99a66cfcb87f966cc12023-11-03T14:36:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-06-017696997010.1080/23802359.2022.20800162080016The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae)Jin Zhang0Yishan Yang1Jianmin Tang2Yajin Luo3Huqiang Lv4Shengfeng Chai5College of Pharmacy, Guilin Medical UniversityCollege of Pharmacy, Guilin Medical UniversityGuangxi Key Laboratory of Functional Phytochemicals Research and Utilization, Guangxi Institute of Botany, Guangxi Zhuang Autonomous Region and Chinese Academy of SciencesYachang Orchid National Nature Reserve Management CenterCollege of Pharmacy, Guilin Medical UniversityCollege of Pharmacy, Guilin Medical UniversityHabenaria dentata is a rare species with high ornamental value in China. In this study, we report the complete chloroplast (cp) genome of H. dentata using the Illumina sequencing data. The total genome of H. dentata is 153,682 bp in length and the GC content is 36.62%, with a pair of inverted repeats (IRs) regions of 26,339 bp each, a large single-copy (LSC) region of 83,963 bp and a small single-copy (SSC) region of 17,041 bp. The cp genome encoded 133 genes, including 87 protein-coding genes (PCG), eight rRNA genes, and 38 tRNA genes. The maximum-likelihood phylogenetic analysis based on 12 cp genomes showed that H. dentata was sister to Habenaria chejuensis and Habenaria ciliolaris. This work will be valuable for genetic and phylogenetic studies on H. dentata.http://dx.doi.org/10.1080/23802359.2022.2080016habenaria dentatacomplete chloroplast genomeorchidaceaephylogenomics |
| spellingShingle | Jin Zhang Yishan Yang Jianmin Tang Yajin Luo Huqiang Lv Shengfeng Chai The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) Mitochondrial DNA. Part B. Resources habenaria dentata complete chloroplast genome orchidaceae phylogenomics |
| title | The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) |
| title_full | The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) |
| title_fullStr | The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) |
| title_short | The complete chloroplast genome sequence of Habenaria dentata (Orchidaceae) |
| title_sort | complete chloroplast genome sequence of habenaria dentata orchidaceae |
| topic | habenaria dentata complete chloroplast genome orchidaceae phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2022.2080016 |
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