Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review

The phytomicrobiome plays a crucial role in soil and ecosystem health, encompassing both beneficial members providing critical ecosystem goods and services and pathogens threatening food safety and security. The potential benefits of harnessing the power of the phytomicrobiome for plant disease supp...

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Main Authors: Wen Chen, Dixi Modi, Adeline Picot
Format: Article
Language:English
Published: MDPI AG 2023-07-01
Series:Plants
Subjects:
Online Access:https://www.mdpi.com/2223-7747/12/14/2736
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author Wen Chen
Dixi Modi
Adeline Picot
author_facet Wen Chen
Dixi Modi
Adeline Picot
author_sort Wen Chen
collection DOAJ
description The phytomicrobiome plays a crucial role in soil and ecosystem health, encompassing both beneficial members providing critical ecosystem goods and services and pathogens threatening food safety and security. The potential benefits of harnessing the power of the phytomicrobiome for plant disease suppression and management are indisputable and of interest in agriculture but also in forestry and landscaping. Indeed, plant diseases can be mitigated by in situ manipulations of resident microorganisms through agronomic practices (such as minimum tillage, crop rotation, cover cropping, organic mulching, etc.) as well as by applying microbial inoculants. However, numerous challenges, such as the lack of standardized methods for microbiome analysis and the difficulty in translating research findings into practical applications are at stake. Moreover, climate change is affecting the distribution, abundance, and virulence of many plant pathogens, while also altering the phytomicrobiome functioning, further compounding disease management strategies. Here, we will first review literature demonstrating how agricultural practices have been found effective in promoting soil health and enhancing disease suppressiveness and mitigation through a shift of the phytomicrobiome. Challenges and barriers to the identification and use of the phytomicrobiome for plant disease management will then be discussed before focusing on the potential impacts of climate change on the phytomicrobiome functioning and disease outcome.
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spelling doaj.art-533c9034dcbf42959e9e9f12f5ca1fc32023-11-18T21:01:20ZengMDPI AGPlants2223-77472023-07-011214273610.3390/plants12142736Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A ReviewWen Chen0Dixi Modi1Adeline Picot2Ottawa Research and Development Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, CanadaOttawa Research and Development Centre, Science and Technology Branch, Agriculture and Agri-Food Canada, Ottawa, ON K1A 0C6, CanadaUniv Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, FranceThe phytomicrobiome plays a crucial role in soil and ecosystem health, encompassing both beneficial members providing critical ecosystem goods and services and pathogens threatening food safety and security. The potential benefits of harnessing the power of the phytomicrobiome for plant disease suppression and management are indisputable and of interest in agriculture but also in forestry and landscaping. Indeed, plant diseases can be mitigated by in situ manipulations of resident microorganisms through agronomic practices (such as minimum tillage, crop rotation, cover cropping, organic mulching, etc.) as well as by applying microbial inoculants. However, numerous challenges, such as the lack of standardized methods for microbiome analysis and the difficulty in translating research findings into practical applications are at stake. Moreover, climate change is affecting the distribution, abundance, and virulence of many plant pathogens, while also altering the phytomicrobiome functioning, further compounding disease management strategies. Here, we will first review literature demonstrating how agricultural practices have been found effective in promoting soil health and enhancing disease suppressiveness and mitigation through a shift of the phytomicrobiome. Challenges and barriers to the identification and use of the phytomicrobiome for plant disease management will then be discussed before focusing on the potential impacts of climate change on the phytomicrobiome functioning and disease outcome.https://www.mdpi.com/2223-7747/12/14/2736agronomic practicesclimate changephytomicrobiomeplant pathogens
spellingShingle Wen Chen
Dixi Modi
Adeline Picot
Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
Plants
agronomic practices
climate change
phytomicrobiome
plant pathogens
title Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
title_full Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
title_fullStr Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
title_full_unstemmed Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
title_short Soil and Phytomicrobiome for Plant Disease Suppression and Management under Climate Change: A Review
title_sort soil and phytomicrobiome for plant disease suppression and management under climate change a review
topic agronomic practices
climate change
phytomicrobiome
plant pathogens
url https://www.mdpi.com/2223-7747/12/14/2736
work_keys_str_mv AT wenchen soilandphytomicrobiomeforplantdiseasesuppressionandmanagementunderclimatechangeareview
AT diximodi soilandphytomicrobiomeforplantdiseasesuppressionandmanagementunderclimatechangeareview
AT adelinepicot soilandphytomicrobiomeforplantdiseasesuppressionandmanagementunderclimatechangeareview