Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer
Abstract Gastric cancer is the common type of malignancy positioned at second in mortality rate causing burden worldwide with increasing treatment options. More accurate and reliable diagnostic methods/biomarkers are urgently needed. The application of transcriptomics technologies possesses the high...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2022-07-01
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| Series: | Scientific Reports |
| Online Access: | https://doi.org/10.1038/s41598-022-15826-y |
| _version_ | 1828746941103603712 |
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| author | Preethi Vetrivel Santhi Nachimuthu Abusaliya Abuyaseer Pritam Bhagwan Bhosale Sang Eun Ha Hun Hwan Kim Min Young Park Gon Sup Kim |
| author_facet | Preethi Vetrivel Santhi Nachimuthu Abusaliya Abuyaseer Pritam Bhagwan Bhosale Sang Eun Ha Hun Hwan Kim Min Young Park Gon Sup Kim |
| author_sort | Preethi Vetrivel |
| collection | DOAJ |
| description | Abstract Gastric cancer is the common type of malignancy positioned at second in mortality rate causing burden worldwide with increasing treatment options. More accurate and reliable diagnostic methods/biomarkers are urgently needed. The application of transcriptomics technologies possesses the high efficiency of identifying key metabolic pathways and functional genes in cancer research. In this study, we performed a transcriptome analysis on Prunetin treated AGS cells. A total of 1,118 differentially expressed (DE) genes on Prunetin treated AGS cancer cells, among which 463 were up-regulated and 655 were down-regulated. Notably, around 40 genes were found to be related with necroptosis, among which 16 genes were found to be in close association with Receptor Interacting Protein Kinase (RIPK) family. Validation of the RIPK genes through GEPIA identified 8 genes (NRP1, MNX1, SSRP1, PRDX2, PLRG1, LGALS4, SNX5 and FXYD3) which are highly expressed in stomach cancer were significantly down-regulated in PRU treated samples. In conclusion, the sequencing data explores the expression of RIPK mediated genes through necroptosis signaling network in treating gastric cancer. The futuristic validations on the 8 genes as candidate biomarkers will offer a treatment approach against gastric cancer using PRU. |
| first_indexed | 2024-04-14T04:33:51Z |
| format | Article |
| id | doaj.art-537121ad0f524dac97dd73f96abdf0a4 |
| institution | Directory Open Access Journal |
| issn | 2045-2322 |
| language | English |
| last_indexed | 2024-04-14T04:33:51Z |
| publishDate | 2022-07-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Reports |
| spelling | doaj.art-537121ad0f524dac97dd73f96abdf0a42022-12-22T02:11:56ZengNature PortfolioScientific Reports2045-23222022-07-0112111210.1038/s41598-022-15826-yInvestigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancerPreethi Vetrivel0Santhi Nachimuthu1Abusaliya Abuyaseer2Pritam Bhagwan Bhosale3Sang Eun Ha4Hun Hwan Kim5Min Young Park6Gon Sup Kim7Research Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityDepartment of Biochemistry, Biotechnology and Bioinformatics, Avinashilingam Institute for Home Science and Higher Education for WomenResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityResearch Institute of Life science and College of Veterinary Medicine, Gyeongsang National UniversityAbstract Gastric cancer is the common type of malignancy positioned at second in mortality rate causing burden worldwide with increasing treatment options. More accurate and reliable diagnostic methods/biomarkers are urgently needed. The application of transcriptomics technologies possesses the high efficiency of identifying key metabolic pathways and functional genes in cancer research. In this study, we performed a transcriptome analysis on Prunetin treated AGS cells. A total of 1,118 differentially expressed (DE) genes on Prunetin treated AGS cancer cells, among which 463 were up-regulated and 655 were down-regulated. Notably, around 40 genes were found to be related with necroptosis, among which 16 genes were found to be in close association with Receptor Interacting Protein Kinase (RIPK) family. Validation of the RIPK genes through GEPIA identified 8 genes (NRP1, MNX1, SSRP1, PRDX2, PLRG1, LGALS4, SNX5 and FXYD3) which are highly expressed in stomach cancer were significantly down-regulated in PRU treated samples. In conclusion, the sequencing data explores the expression of RIPK mediated genes through necroptosis signaling network in treating gastric cancer. The futuristic validations on the 8 genes as candidate biomarkers will offer a treatment approach against gastric cancer using PRU.https://doi.org/10.1038/s41598-022-15826-y |
| spellingShingle | Preethi Vetrivel Santhi Nachimuthu Abusaliya Abuyaseer Pritam Bhagwan Bhosale Sang Eun Ha Hun Hwan Kim Min Young Park Gon Sup Kim Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer Scientific Reports |
| title | Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| title_full | Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| title_fullStr | Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| title_full_unstemmed | Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| title_short | Investigation on the cellular mechanism of Prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| title_sort | investigation on the cellular mechanism of prunetin evidenced through next generation sequencing and bioinformatic approaches against gastric cancer |
| url | https://doi.org/10.1038/s41598-022-15826-y |
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