Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China
Eleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in lengt...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1768929 |
| _version_ | 1827772846192984064 |
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| author | Zhuo Tian |
| author_facet | Zhuo Tian |
| author_sort | Zhuo Tian |
| collection | DOAJ |
| description | Eleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in length as a circle. It contained a large single-copy (LSC) region of 86,756 bp, a small single- copy (SSC) region of 18,154 bp and separated by two inverted repeat (IR) regions of 25,929 bp. The base compositions of chloroplast genome is uneven and the overall nucleotide composition is: A (30.7%), T (31.4%), C (19.3%) and G (18.6%), with a total G + C content (39.4%). It comprised 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. 8 PCG genes species, 7 tRNA genes species and 4 rRNA species were found duplicated in the IR regions. The phylogenetic analysis result shown that the chloroplast genome of E. senticosus is closest to Eleutherococcus sessiliflorus of the family Araliaceae in this study by the maximum-likelihood (ML) method. The complete chloroplast genome of E. senticosus can provide more genomics information for further research on the species in China. |
| first_indexed | 2024-03-11T13:14:35Z |
| format | Article |
| id | doaj.art-539fbd84109d48aeaa342a4ce627d49e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:35Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-539fbd84109d48aeaa342a4ce627d49e2023-11-03T13:50:21ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532133213410.1080/23802359.2020.17689291768929Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in ChinaZhuo Tian0College of Information Technology, Jilin Agricultural UniversityEleutherococcus senticosus is a highly valued woody herb medicinal plant belonging to the family Araliaceae, which is also the popular edible plant in China. In this paper, the chloroplast genome of E. senticosus was completed. The complete chloroplast genome of E. senticosus was 156,768 bp in length as a circle. It contained a large single-copy (LSC) region of 86,756 bp, a small single- copy (SSC) region of 18,154 bp and separated by two inverted repeat (IR) regions of 25,929 bp. The base compositions of chloroplast genome is uneven and the overall nucleotide composition is: A (30.7%), T (31.4%), C (19.3%) and G (18.6%), with a total G + C content (39.4%). It comprised 134 genes, including 89 protein-coding genes (PCGs), 37 transfer RNA (tRNA) genes and 8 ribosomal RNA (rRNA) genes. 8 PCG genes species, 7 tRNA genes species and 4 rRNA species were found duplicated in the IR regions. The phylogenetic analysis result shown that the chloroplast genome of E. senticosus is closest to Eleutherococcus sessiliflorus of the family Araliaceae in this study by the maximum-likelihood (ML) method. The complete chloroplast genome of E. senticosus can provide more genomics information for further research on the species in China.http://dx.doi.org/10.1080/23802359.2020.1768929eleutherococcus senticosuschloroplast genomegenomicsphylogenetic analysis |
| spellingShingle | Zhuo Tian Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China Mitochondrial DNA. Part B. Resources eleutherococcus senticosus chloroplast genome genomics phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China |
| title_full | Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China |
| title_fullStr | Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China |
| title_short | Characterization of the complete chloroplast genome of Eleutherococcus senticosus (Araliaceae) as an herb in China |
| title_sort | characterization of the complete chloroplast genome of eleutherococcus senticosus araliaceae as an herb in china |
| topic | eleutherococcus senticosus chloroplast genome genomics phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1768929 |
| work_keys_str_mv | AT zhuotian characterizationofthecompletechloroplastgenomeofeleutherococcussenticosusaraliaceaeasanherbinchina |