Identification of bZIP transcription factors and their responses to brown spot in pear
Abstract Basic leucine zipper (bZIP) is a conserved transcription factor (TF) widely present in eukaryotes, and it plays an important role in regulating plant growth and stress responses. To better understand the white pear bZIP gene family, comprehensive bioinformatics analysis of the pear genome w...
| Main Authors: | , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Sociedade Brasileira de Genética
2022-01-01
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| Series: | Genetics and Molecular Biology |
| Subjects: | |
| Online Access: | http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572022000100303&tlng=en |
| _version_ | 1818871233862696960 |
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| author | Li Liu Yuxin Zhang Qi Wang Xingyu Tao Jing Fang Wenjuan Zheng Liwu Zhu Bing Jia Wei Heng Shaowen Li |
| author_facet | Li Liu Yuxin Zhang Qi Wang Xingyu Tao Jing Fang Wenjuan Zheng Liwu Zhu Bing Jia Wei Heng Shaowen Li |
| author_sort | Li Liu |
| collection | DOAJ |
| description | Abstract Basic leucine zipper (bZIP) is a conserved transcription factor (TF) widely present in eukaryotes, and it plays an important role in regulating plant growth and stress responses. To better understand the white pear bZIP gene family, comprehensive bioinformatics analysis of the pear genome was performed. A total of 84 PbbZIP genes were identified, which were divided into 13 subfamilies by phylogenetic analysis. The 84 PbbZIP genes were all located in the nucleus, and 77 of those genes were unevenly distributed across the 17 chromosomes of white pear. The other 7 PbbZIP genes were located on the scaffold. Subsequent expression profile analysis showed that PbbZIP genes in exocarp were significantly upregulated or downregulated in ‘Huangguan’ pear with brown spot (BS) compared with healthy pear and in response to hormonal treatment with gibberellin A3 (GA3). These results provide helpful insights into the characteristics of PbbZIP genes and their responses to BS in ‘Huangguan’ pear. |
| first_indexed | 2024-12-19T12:19:40Z |
| format | Article |
| id | doaj.art-53c6c6dfe4934bdda902e6f0741a200e |
| institution | Directory Open Access Journal |
| issn | 1678-4685 |
| language | English |
| last_indexed | 2024-12-19T12:19:40Z |
| publishDate | 2022-01-01 |
| publisher | Sociedade Brasileira de Genética |
| record_format | Article |
| series | Genetics and Molecular Biology |
| spelling | doaj.art-53c6c6dfe4934bdda902e6f0741a200e2022-12-21T20:21:51ZengSociedade Brasileira de GenéticaGenetics and Molecular Biology1678-46852022-01-0145110.1590/1678-4685-gmb-2021-0175Identification of bZIP transcription factors and their responses to brown spot in pearLi LiuYuxin ZhangQi WangXingyu TaoJing FangWenjuan ZhengLiwu ZhuBing JiaWei HengShaowen Lihttps://orcid.org/0000-0002-2923-501XAbstract Basic leucine zipper (bZIP) is a conserved transcription factor (TF) widely present in eukaryotes, and it plays an important role in regulating plant growth and stress responses. To better understand the white pear bZIP gene family, comprehensive bioinformatics analysis of the pear genome was performed. A total of 84 PbbZIP genes were identified, which were divided into 13 subfamilies by phylogenetic analysis. The 84 PbbZIP genes were all located in the nucleus, and 77 of those genes were unevenly distributed across the 17 chromosomes of white pear. The other 7 PbbZIP genes were located on the scaffold. Subsequent expression profile analysis showed that PbbZIP genes in exocarp were significantly upregulated or downregulated in ‘Huangguan’ pear with brown spot (BS) compared with healthy pear and in response to hormonal treatment with gibberellin A3 (GA3). These results provide helpful insights into the characteristics of PbbZIP genes and their responses to BS in ‘Huangguan’ pear.http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572022000100303&tlng=enPearbZIP gene familybrown spothormoneexpression profile |
| spellingShingle | Li Liu Yuxin Zhang Qi Wang Xingyu Tao Jing Fang Wenjuan Zheng Liwu Zhu Bing Jia Wei Heng Shaowen Li Identification of bZIP transcription factors and their responses to brown spot in pear Genetics and Molecular Biology Pear bZIP gene family brown spot hormone expression profile |
| title | Identification of bZIP transcription factors and their responses to brown spot in pear |
| title_full | Identification of bZIP transcription factors and their responses to brown spot in pear |
| title_fullStr | Identification of bZIP transcription factors and their responses to brown spot in pear |
| title_full_unstemmed | Identification of bZIP transcription factors and their responses to brown spot in pear |
| title_short | Identification of bZIP transcription factors and their responses to brown spot in pear |
| title_sort | identification of bzip transcription factors and their responses to brown spot in pear |
| topic | Pear bZIP gene family brown spot hormone expression profile |
| url | http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572022000100303&tlng=en |
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