CODON-Software to manual curation of prokaryotic genomes.

CODON-Software to manual curation of prokaryotic genomes.

Genome annotation conceptually consists of inferring and assigning biological information to gene products. Over the years, numerous pipelines and computational tools have been developed aiming to automate this task and assist researchers in gaining knowledge about target genes of study. However, ev...

Full description

Bibliographic Details
Main Authors:	Bruno Merlin, Jorianne Thyeska Castro Alves, Pablo Henrique Caracciolo Gomes de Sá, Mônica Silva de Oliveira, Larissa Maranhão Dias, Gislenne da Silva Moia, Victória Cardoso Dos Santos, Adonney Allan de Oliveira Veras
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2021-03-01
Series:	PLoS Computational Biology
Online Access:	https://doi.org/10.1371/journal.pcbi.1008797

Similar Items

Protocol to analyze the bacterial pangenome using PAN2HGENE software
by: Pablo Henrique Caracciolo Gomes de Sá, et al.
Published: (2022-06-01)

BADASS: BActeriocin-Diversity ASsessment Software
by: Sávio S. Costa, et al.
Published: (2023-01-01)

PAN2HGENE-tool for comparative analysis and identifying new gene products.
by: Mônica Silva de Oliveira, et al.
Published: (2021-01-01)

ImproveAssembly - Tool for identifying new gene products and improving genome assembly.
by: Adonney Allan de Oliveira Veras, et al.
Published: (2018-01-01)

Codon pair bias in prokaryotic and eukaryotic genomes
by: Stansfield Ian, et al.
Published: (2005-09-01)

Draft genome sequence of Psychrobacter sp. ENNN9_III, a strain isolated from water in a polluted temperate estuarine system (Ria de Aveiro, Portugal)
by: Jaqueline Conceição Meireles Gomes, et al.
Published: (2016-06-01)

GapBlaster-A Graphical Gap Filler for Prokaryote Genomes.
by: Pablo H C G de Sá, et al.
Published: (2016-01-01)

Prokaryotic expression of goldfish Tgf2 transposase with optimal codons and its enzyme activity
by: Xi Zhao, et al.
Published: (2019-05-01)

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
by: Esaki Nobuyoshi, et al.
Published: (2007-06-01)

Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation
by: José Luis López, et al.
Published: (2020-08-01)

Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events
by: Frida Belinky, et al.
Published: (2021-02-01)

Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes
by: Tse Herman, et al.
Published: (2010-09-01)

Digital curation : a how-to-do-it manual /
by: Harvey, D. R. (Douglas Ross), 1951-
Published: (2010)

Functional annotation of hypothetical proteins from the Exiguobacterium antarcticum strain B7 reveals proteins involved in adaptation to extreme environments, including high arsenic resistance.
by: Wana Lailan Oliveira da Costa, et al.
Published: (2018-01-01)

Making a Manual: The Manual for the Curation and Display of Interactive New Media Art
by: Rene G. Cepeda
Published: (2023-02-01)

Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry
by: J. L. López, et al.
Published: (2019-06-01)

EDGAR: A software framework for the comparative analysis of prokaryotic genomes
by: Vorhölter Frank-Jörg, et al.
Published: (2009-05-01)

Manually curated dataset of catalytic peptides for ester hydrolysis
by: Patrizia Janković, et al.
Published: (2023-06-01)

Imitating manual curation of text-mined facts in biomedicine.
by: Raul Rodriguez-Esteban, et al.
Published: (2006-09-01)

DAMPD : a manually curated antimicrobial peptide database
by: Archer, John A. C., et al.
Published: (2014)

A beginner’s guide to manual curation of transposable elements
by: Clement Goubert, et al.
Published: (2022-03-01)

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
by: Cohen K Bretonnel, et al.
Published: (2009-10-01)

iCodon customizes gene expression based on the codon composition
by: Michay Diez, et al.
Published: (2022-07-01)

CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes
by: Lei Sun, et al.
Published: (2022-05-01)

Software Curation in Research Libraries: Practice and Promise
by: Alexandra Chassanoff, et al.
Published: (2018-10-01)

Correction: A beginner’s guide to manual curation of transposable elements
by: Clement Goubert, et al.
Published: (2022-05-01)

Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.
by: Craig Alan Gough, et al.
Published: (2012-01-01)

Prokaryotes
by: Armitage, J
Published: (2006)

Extended stop codon context predicts nonsense codon readthrough efficiency in human cells
by: Kotchaphorn Mangkalaphiban, et al.
Published: (2024-03-01)

Biological Nitrogen Removal Database: A Manually Curated Data Resource
by: Tanyaradzwa R. Ngara, et al.
Published: (2022-02-01)

CYTOCON: The manually curated database of human in vivo cell and molecule concentrations
by: Vladislav Leonov, et al.
Published: (2023-01-01)

Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials
by: Laura Aliisa Saarimäki, et al.
Published: (2021-02-01)

MIKB: A manually curated and comprehensive knowledge base for myocardial infarction
by: Chaoying Zhan, et al.
Published: (2021-01-01)

Forecasting software manual /
by: 248096 Morton, Thomas E., et al.
Published: (1999)

Scheduling software manual /
by: 248096 Morton, Thomas E., et al.
Published: (1999)

CodonGenie: optimised ambiguous codon design tools
by: Neil Swainston, et al.
Published: (2017-07-01)

Prokaryotic genomics /
by: Blot, Michel
Published: (2003)

Inclusions in prokaryotes /
by: Shively, Jessup M.
Published: (2006)

Prokaryote Organisms /
by: Sousa, Nova, author 648855
Published: (2012)

Prokaryotic Aquaporins
by: Huichun Tong, et al.
Published: (2019-10-01)