The Specific Capsule Depolymerase of Phage PMK34 Sensitizes <i>Acinetobacter baumannii</i> to Serum Killing

The rising antimicrobial resistance is particularly alarming for <i>Acinetobacter baumannii</i>, calling for the discovery and evaluation of alternatives to treat <i>A. baumannii</i> infections. Some bacteriophages produce a structural protein that depolymerizes capsular exop...

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Main Authors: Karim Abdelkader, Diana Gutiérrez, Agnieszka Latka, Dimitri Boeckaerts, Zuzanna Drulis-Kawa, Bjorn Criel, Hans Gerstmans, Amal Safaan, Ahmed S. Khairalla, Yasser Gaber, Tarek Dishisha, Yves Briers
Format: Article
Language:English
Published: MDPI AG 2022-05-01
Series:Antibiotics
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Online Access:https://www.mdpi.com/2079-6382/11/5/677
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Summary:The rising antimicrobial resistance is particularly alarming for <i>Acinetobacter baumannii</i>, calling for the discovery and evaluation of alternatives to treat <i>A. baumannii</i> infections. Some bacteriophages produce a structural protein that depolymerizes capsular exopolysaccharide. Such purified depolymerases are considered as novel antivirulence compounds. We identified and characterized a depolymerase (DpoMK34) from Acinetobacter phage vB_AbaP_PMK34 active against the clinical isolate <i>A. baumannii</i> MK34. In silico analysis reveals a modular protein displaying a conserved N-terminal domain for anchoring to the phage tail, and variable central and C-terminal domains for enzymatic activity and specificity. AlphaFold-Multimer predicts a trimeric protein adopting an elongated structure due to a long α-helix, an enzymatic β-helix domain and a hypervariable 4 amino acid hotspot in the most ultimate loop of the C-terminal domain. In contrast to the tail fiber of phage T3, this hypervariable hotspot appears unrelated with the primary receptor. The functional characterization of DpoMK34 revealed a mesophilic enzyme active up to 50 °C across a wide pH range (4 to 11) and specific for the capsule of <i>A. baumannii</i> MK34. Enzymatic degradation of the <i>A. baumannii</i> MK34 capsule causes a significant drop in phage adsorption from 95% to 9% after 5 min. Although lacking intrinsic antibacterial activity, DpoMK34 renders <i>A. baumannii</i> MK34 fully susceptible to serum killing in a serum concentration dependent manner. Unlike phage PMK34, DpoMK34 does not easily select for resistant mutants either against PMK34 or itself. In sum, DpoMK34 is a potential antivirulence compound that can be included in a depolymerase cocktail to control difficult to treat <i>A. baumannii</i> infections.
ISSN:2079-6382