Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models
Reactions forming a pathway can be rewritten by making explicit the different molecular components involved in them. A molecular component represents a biological entity (e.g. a protein) in all its states (free, bound, degraded, etc.). In this paper we show the application of a component identificat...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
Open Publishing Association
2013-09-01
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| Series: | Electronic Proceedings in Theoretical Computer Science |
| Online Access: | http://arxiv.org/pdf/1309.7689v1 |
| Summary: | Reactions forming a pathway can be rewritten by making explicit the different molecular components involved in them. A molecular component represents a biological entity (e.g. a protein) in all its states (free, bound, degraded, etc.). In this paper we show the application of a component identification algorithm to a number of real-world models to experimentally validate the approach. Components identification allows subpathways to be computed to better understand the pathway functioning. |
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| ISSN: | 2075-2180 |