Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models
Reactions forming a pathway can be rewritten by making explicit the different molecular components involved in them. A molecular component represents a biological entity (e.g. a protein) in all its states (free, bound, degraded, etc.). In this paper we show the application of a component identificat...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
Open Publishing Association
2013-09-01
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| Series: | Electronic Proceedings in Theoretical Computer Science |
| Online Access: | http://arxiv.org/pdf/1309.7689v1 |
| _version_ | 1811304661201715200 |
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| author | Giovanni Pardini Andrea Maggiolo-Schettini Paolo Milazzo |
| author_facet | Giovanni Pardini Andrea Maggiolo-Schettini Paolo Milazzo |
| author_sort | Giovanni Pardini |
| collection | DOAJ |
| description | Reactions forming a pathway can be rewritten by making explicit the different molecular components involved in them. A molecular component represents a biological entity (e.g. a protein) in all its states (free, bound, degraded, etc.). In this paper we show the application of a component identification algorithm to a number of real-world models to experimentally validate the approach. Components identification allows subpathways to be computed to better understand the pathway functioning. |
| first_indexed | 2024-04-13T08:11:14Z |
| format | Article |
| id | doaj.art-5492d2d37b97485093c0b7f689dd69ed |
| institution | Directory Open Access Journal |
| issn | 2075-2180 |
| language | English |
| last_indexed | 2024-04-13T08:11:14Z |
| publishDate | 2013-09-01 |
| publisher | Open Publishing Association |
| record_format | Article |
| series | Electronic Proceedings in Theoretical Computer Science |
| spelling | doaj.art-5492d2d37b97485093c0b7f689dd69ed2022-12-22T02:54:59ZengOpen Publishing AssociationElectronic Proceedings in Theoretical Computer Science2075-21802013-09-01130Proc. Wivace 2013435210.4204/EPTCS.130.7Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML ModelsGiovanni PardiniAndrea Maggiolo-SchettiniPaolo MilazzoReactions forming a pathway can be rewritten by making explicit the different molecular components involved in them. A molecular component represents a biological entity (e.g. a protein) in all its states (free, bound, degraded, etc.). In this paper we show the application of a component identification algorithm to a number of real-world models to experimentally validate the approach. Components identification allows subpathways to be computed to better understand the pathway functioning.http://arxiv.org/pdf/1309.7689v1 |
| spellingShingle | Giovanni Pardini Andrea Maggiolo-Schettini Paolo Milazzo Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models Electronic Proceedings in Theoretical Computer Science |
| title | Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models |
| title_full | Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models |
| title_fullStr | Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models |
| title_full_unstemmed | Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models |
| title_short | Application of a Semi-automatic Algorithm for Identification of Molecular Components in SBML Models |
| title_sort | application of a semi automatic algorithm for identification of molecular components in sbml models |
| url | http://arxiv.org/pdf/1309.7689v1 |
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