Inferences from inventories of microbes in ecological vineyard settings
The effect of degraded soil conditions on microbial communities associating the rhizosphere and roots of grapevines was investigated within the frame of project CORE Organic Plus ReSolVe. Several relationships based on Dice cluster analyses of DGGE gel profiles suggest that fungal and bacterial comm...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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University of Bologna
2018-08-01
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| Series: | EQA |
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| Online Access: | https://eqa.unibo.it/article/view/7921 |
| _version_ | 1818256825684852736 |
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| author | Hans-Josef Schroers Maurizio Castaldini Anna Mårtensson |
| author_facet | Hans-Josef Schroers Maurizio Castaldini Anna Mårtensson |
| author_sort | Hans-Josef Schroers |
| collection | DOAJ |
| description | The effect of degraded soil conditions on microbial communities associating the rhizosphere and roots of grapevines was investigated within the frame of project CORE Organic Plus ReSolVe. Several relationships based on Dice cluster analyses of DGGE gel profiles suggest that fungal and bacterial communities from degraded and non-degraded areas differ. Results also suggest that composted organic amendments had an effect on community structures. However, the comparison of diversity indexes did not show differences between degraded and non-degraded plots. They suggested rich and even diversity of bacteria and fungi in any of the tested samples. Culture dependent analysis emphasized that a high diversity of Streptomyces spp. associates grapevine roots in degraded and non-degraded areas. Streptomyces species, best known for their potential to produce antibiotics, are increasingly depicted as beneficial plant associated bacteria. |
| first_indexed | 2024-12-12T17:33:55Z |
| format | Article |
| id | doaj.art-550b52265f1843439d1171e5e1737bd3 |
| institution | Directory Open Access Journal |
| issn | 2039-9898 2281-4485 |
| language | English |
| last_indexed | 2024-12-12T17:33:55Z |
| publishDate | 2018-08-01 |
| publisher | University of Bologna |
| record_format | Article |
| series | EQA |
| spelling | doaj.art-550b52265f1843439d1171e5e1737bd32022-12-22T00:17:17ZengUniversity of BolognaEQA2039-98982281-44852018-08-01310475610.6092/issn.2281-4485/79217467Inferences from inventories of microbes in ecological vineyard settingsHans-Josef Schroers0Maurizio Castaldini1Anna Mårtensson2Agricultural Institute of Slovenia Hacquetova ulica 17 1000 Ljubljana SloveniaCouncil for Agricultural Research and Economics Research Center for Agriculture and Environment Via di Lanciola 12/A 50125 Cascine del Riccio (FI) ItalySwedish University of Agricultural Sciences, Uppsala, SwedenThe effect of degraded soil conditions on microbial communities associating the rhizosphere and roots of grapevines was investigated within the frame of project CORE Organic Plus ReSolVe. Several relationships based on Dice cluster analyses of DGGE gel profiles suggest that fungal and bacterial communities from degraded and non-degraded areas differ. Results also suggest that composted organic amendments had an effect on community structures. However, the comparison of diversity indexes did not show differences between degraded and non-degraded plots. They suggested rich and even diversity of bacteria and fungi in any of the tested samples. Culture dependent analysis emphasized that a high diversity of Streptomyces spp. associates grapevine roots in degraded and non-degraded areas. Streptomyces species, best known for their potential to produce antibiotics, are increasingly depicted as beneficial plant associated bacteria.https://eqa.unibo.it/article/view/7921microbial community structureDGGEfungibacteriaActinobacteriaStreptomyces |
| spellingShingle | Hans-Josef Schroers Maurizio Castaldini Anna Mårtensson Inferences from inventories of microbes in ecological vineyard settings EQA microbial community structure DGGE fungi bacteria Actinobacteria Streptomyces |
| title | Inferences from inventories of microbes in ecological vineyard settings |
| title_full | Inferences from inventories of microbes in ecological vineyard settings |
| title_fullStr | Inferences from inventories of microbes in ecological vineyard settings |
| title_full_unstemmed | Inferences from inventories of microbes in ecological vineyard settings |
| title_short | Inferences from inventories of microbes in ecological vineyard settings |
| title_sort | inferences from inventories of microbes in ecological vineyard settings |
| topic | microbial community structure DGGE fungi bacteria Actinobacteria Streptomyces |
| url | https://eqa.unibo.it/article/view/7921 |
| work_keys_str_mv | AT hansjosefschroers inferencesfrominventoriesofmicrobesinecologicalvineyardsettings AT mauriziocastaldini inferencesfrominventoriesofmicrobesinecologicalvineyardsettings AT annamartensson inferencesfrominventoriesofmicrobesinecologicalvineyardsettings |