Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav
Chilean peppers, cultivated from <i>Capsicum pubescens</i>, are globally renowned as popular vegetable and spice crops. <i>C. pubescens</i> belongs to the <i>Capsicum</i> L. (pepper) family and is one of the five pepper cultivars grown in China. In this study, we...
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MDPI AG
2024-01-01
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| Series: | Genes |
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| Online Access: | https://www.mdpi.com/2073-4425/15/2/152 |
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| author | Di Wu Wenting Fu Gaoling Fan Dongfu Huang Kangyun Wu Yongfa Zhan Xiangmin Tu Jianwen He |
| author_facet | Di Wu Wenting Fu Gaoling Fan Dongfu Huang Kangyun Wu Yongfa Zhan Xiangmin Tu Jianwen He |
| author_sort | Di Wu |
| collection | DOAJ |
| description | Chilean peppers, cultivated from <i>Capsicum pubescens</i>, are globally renowned as popular vegetable and spice crops. <i>C. pubescens</i> belongs to the <i>Capsicum</i> L. (pepper) family and is one of the five pepper cultivars grown in China. In this study, we assembled and annotated the complete mt genome of <i>C. pubescens</i>. We investigated several aspects of its genome, including characteristics, codon usage, RNA editing sites, repeat sequences, selective pressure, gene clusters, and phylogenetic relationships. Furthermore, we compared it with other plant mt genomes. The data we obtained will provide valuable information for studying evolutionary processes in the Capsicum genus and will assist in the functional analysis of Capsicum mitogenomes. |
| first_indexed | 2024-03-07T22:31:35Z |
| format | Article |
| id | doaj.art-5594740b80a244b1bcc65554c0c92d9e |
| institution | Directory Open Access Journal |
| issn | 2073-4425 |
| language | English |
| last_indexed | 2024-03-07T22:31:35Z |
| publishDate | 2024-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Genes |
| spelling | doaj.art-5594740b80a244b1bcc65554c0c92d9e2024-02-23T15:17:40ZengMDPI AGGenes2073-44252024-01-0115215210.3390/genes15020152Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & PavDi Wu0Wenting Fu1Gaoling Fan2Dongfu Huang3Kangyun Wu4Yongfa Zhan5Xiangmin Tu6Jianwen He7Research Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaKey Laboratory of Crop Genetic Resources and Germplasm Innovation in Karst Mountain Areas, Ministry of Agriculture and Rural Affairs, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaResearch Institute of Pepper, Guizhou Academy of Agricultural Science, Huaxi District, Guiyang 550025, ChinaChilean peppers, cultivated from <i>Capsicum pubescens</i>, are globally renowned as popular vegetable and spice crops. <i>C. pubescens</i> belongs to the <i>Capsicum</i> L. (pepper) family and is one of the five pepper cultivars grown in China. In this study, we assembled and annotated the complete mt genome of <i>C. pubescens</i>. We investigated several aspects of its genome, including characteristics, codon usage, RNA editing sites, repeat sequences, selective pressure, gene clusters, and phylogenetic relationships. Furthermore, we compared it with other plant mt genomes. The data we obtained will provide valuable information for studying evolutionary processes in the Capsicum genus and will assist in the functional analysis of Capsicum mitogenomes.https://www.mdpi.com/2073-4425/15/2/152<i>Capsicum pubescens</i>mitochondrial genomegene clustersselective pressurephylogeny |
| spellingShingle | Di Wu Wenting Fu Gaoling Fan Dongfu Huang Kangyun Wu Yongfa Zhan Xiangmin Tu Jianwen He Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav Genes <i>Capsicum pubescens</i> mitochondrial genome gene clusters selective pressure phylogeny |
| title | Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav |
| title_full | Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav |
| title_fullStr | Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav |
| title_full_unstemmed | Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav |
| title_short | Characteristics and Comparative Analysis of the Special-Structure (Non-Single-Circle) Mitochondrial Genome of <i>Capsicum pubescens</i> Ruiz & Pav |
| title_sort | characteristics and comparative analysis of the special structure non single circle mitochondrial genome of i capsicum pubescens i ruiz pav |
| topic | <i>Capsicum pubescens</i> mitochondrial genome gene clusters selective pressure phylogeny |
| url | https://www.mdpi.com/2073-4425/15/2/152 |
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