The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis
Ulmus szechuanica is a species of Sect.Ulmus and Ser.Nitentes in Ulmaceae, and it is an endangered wild plant in China. The complete chloroplast genome (cp) of U. szechuanica was reported in this study. The result showed that the cp genome was 159,703 bp in length including a large single-copy (LSC)...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1768958 |
| _version_ | 1797639207483604992 |
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| author | Yan Shufang Liu Yichao Feng Shuxiang Huang Xiaoxu Huang Yinran |
| author_facet | Yan Shufang Liu Yichao Feng Shuxiang Huang Xiaoxu Huang Yinran |
| author_sort | Yan Shufang |
| collection | DOAJ |
| description | Ulmus szechuanica is a species of Sect.Ulmus and Ser.Nitentes in Ulmaceae, and it is an endangered wild plant in China. The complete chloroplast genome (cp) of U. szechuanica was reported in this study. The result showed that the cp genome was 159,703 bp in length including a large single-copy (LSC) 88,039 bp and a small single-copy (SSC) 19,072 bp, which were separated by two inverted repeats (IRs) of 26,296 bp with the typical quadripartite structure, respectively. The genome encoded 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content was 35.53%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. szechuanica. The maximum-likelihood phylogenetic analysis showed that U. szechuanica displayed a closer kinship to five other Ulmus species. This study provides important information for identification and conservation of species, germplasm resources utilization, and genetic engineering of Ulmus. The cp will provide a reference for future studies on species evolution of Ulmus. |
| first_indexed | 2024-03-11T13:13:37Z |
| format | Article |
| id | doaj.art-55cfb5389df64a5c80b492096e2cfd37 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:13:37Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-55cfb5389df64a5c80b492096e2cfd372023-11-03T13:50:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532186218710.1080/23802359.2020.17689581768958The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysisYan Shufang0Liu Yichao1Feng Shuxiang2Huang Xiaoxu3Huang Yinran4Hebei Academic of Forestry and GrasslandHebei Academic of Forestry and GrasslandHebei Academic of Forestry and GrasslandHebei Agricultural UniversityHebei Academic of Forestry and GrasslandUlmus szechuanica is a species of Sect.Ulmus and Ser.Nitentes in Ulmaceae, and it is an endangered wild plant in China. The complete chloroplast genome (cp) of U. szechuanica was reported in this study. The result showed that the cp genome was 159,703 bp in length including a large single-copy (LSC) 88,039 bp and a small single-copy (SSC) 19,072 bp, which were separated by two inverted repeats (IRs) of 26,296 bp with the typical quadripartite structure, respectively. The genome encoded 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content was 35.53%. Chloroplast sequences were used for constructing phylogenetic tree to determine the evolutionary status of U. szechuanica. The maximum-likelihood phylogenetic analysis showed that U. szechuanica displayed a closer kinship to five other Ulmus species. This study provides important information for identification and conservation of species, germplasm resources utilization, and genetic engineering of Ulmus. The cp will provide a reference for future studies on species evolution of Ulmus.http://dx.doi.org/10.1080/23802359.2020.1768958chloroplast genomeu. szechuanicaphylogenetic |
| spellingShingle | Yan Shufang Liu Yichao Feng Shuxiang Huang Xiaoxu Huang Yinran The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis Mitochondrial DNA. Part B. Resources chloroplast genome u. szechuanica phylogenetic |
| title | The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis |
| title_full | The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis |
| title_fullStr | The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis |
| title_full_unstemmed | The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis |
| title_short | The complete chloroplast genome sequence of Ulmus szechuanica (Ulmaceae) and its phylogenetic analysis |
| title_sort | complete chloroplast genome sequence of ulmus szechuanica ulmaceae and its phylogenetic analysis |
| topic | chloroplast genome u. szechuanica phylogenetic |
| url | http://dx.doi.org/10.1080/23802359.2020.1768958 |
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