Cancer Segmentation by Entropic Analysis of Ordered Gene Expression Profiles

The availability of massive gene expression data has been challenging in terms of how to cure, process, and extract useful information. Here, we describe the use of entropic measures as discriminating criteria in cancer using the whole data set of gene expression levels. These methods were applied i...

Full description

Bibliographic Details
Main Authors: Ania Mesa-Rodríguez, Augusto Gonzalez, Ernesto Estevez-Rams, Pedro A. Valdes-Sosa
Format: Article
Language:English
Published: MDPI AG 2022-11-01
Series:Entropy
Subjects:
Online Access:https://www.mdpi.com/1099-4300/24/12/1744
Description
Summary:The availability of massive gene expression data has been challenging in terms of how to cure, process, and extract useful information. Here, we describe the use of entropic measures as discriminating criteria in cancer using the whole data set of gene expression levels. These methods were applied in classifying samples between tumor and normal type for 13 types of tumors with a high success ratio. Using gene expression, ordered by pathways, results in complexity–entropy diagrams. The map allows the clustering of the tumor and normal types samples, with a high success rate for nine of the thirteen, studied cancer types. Further analysis using information distance also shows good discriminating behavior, but, more importantly, allows for discriminating between cancer types. Together, our results allow the classification of tissues without the need to identify relevant genes or impose a particular cancer model. The used procedure can be extended to classification problems beyond the reported results.
ISSN:1099-4300