Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants
This article presents dataset on the bacterial community structure associated with rhizospheric sunflower soils from Lichtenburg, South Africa. The Illumina Miseq sequencing of 16S rRNA gene amplicon unveiled the bacterial community diversities as well as generated metagenomic library from sunflower...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2022-06-01
|
| Series: | Data in Brief |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340922004115 |
| _version_ | 1818240421998886912 |
|---|---|
| author | Olubukola Oluranti Babalola Blessing Chidinma Nwachukwu Ayansina Segun Ayangbenro |
| author_facet | Olubukola Oluranti Babalola Blessing Chidinma Nwachukwu Ayansina Segun Ayangbenro |
| author_sort | Olubukola Oluranti Babalola |
| collection | DOAJ |
| description | This article presents dataset on the bacterial community structure associated with rhizospheric sunflower soils from Lichtenburg, South Africa. The Illumina Miseq sequencing of 16S rRNA gene amplicon unveiled the bacterial community diversities as well as generated metagenomic library from sunflower rhizospheric soils to understand the diversities and distribution. The metagenome contained a total of 41,471 sequences with 45,975 operational taxonomic units (OTUs). Metagenome sequence information is obtainable at NCBI under the Bioproject assigned accession number PRJNA782103. Taxonomic hits distribution from USEARCH analysis at phylum level classification of BN_E discovered predominantly Actinobacteria (33.89%), followed by Proteobacteria (35.45%), Firmicutes (6.45%), Planctomycetes (4.12%), Chloroflexi (4.28%) and Gemmatimonadetes (2.40%). Also, USEARCH assisted analysis of BN_F sample also detected the prevalence of Actinobacteria (45.92%), Proteobacteria (23.23%), Firmicutes (3.84%), Planctomycetes (6.46%), Chloroflexi (4.94%) and Gemmatimonadetes (1.99%), which take part in vital ecological functions and biogeochemical activities needed for plant growth and health. |
| first_indexed | 2024-12-12T13:13:11Z |
| format | Article |
| id | doaj.art-5637272fd33b4a5c89ddd94882d9cb26 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-12T13:13:11Z |
| publishDate | 2022-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-5637272fd33b4a5c89ddd94882d9cb262022-12-22T00:23:28ZengElsevierData in Brief2352-34092022-06-0142108207Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plantsOlubukola Oluranti Babalola0Blessing Chidinma Nwachukwu1Ayansina Segun Ayangbenro2Corresponding author.; Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, South AfricaFood Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, South AfricaFood Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, South AfricaThis article presents dataset on the bacterial community structure associated with rhizospheric sunflower soils from Lichtenburg, South Africa. The Illumina Miseq sequencing of 16S rRNA gene amplicon unveiled the bacterial community diversities as well as generated metagenomic library from sunflower rhizospheric soils to understand the diversities and distribution. The metagenome contained a total of 41,471 sequences with 45,975 operational taxonomic units (OTUs). Metagenome sequence information is obtainable at NCBI under the Bioproject assigned accession number PRJNA782103. Taxonomic hits distribution from USEARCH analysis at phylum level classification of BN_E discovered predominantly Actinobacteria (33.89%), followed by Proteobacteria (35.45%), Firmicutes (6.45%), Planctomycetes (4.12%), Chloroflexi (4.28%) and Gemmatimonadetes (2.40%). Also, USEARCH assisted analysis of BN_F sample also detected the prevalence of Actinobacteria (45.92%), Proteobacteria (23.23%), Firmicutes (3.84%), Planctomycetes (6.46%), Chloroflexi (4.94%) and Gemmatimonadetes (1.99%), which take part in vital ecological functions and biogeochemical activities needed for plant growth and health.http://www.sciencedirect.com/science/article/pii/S235234092200411516S rRNA geneIllumina MiSeq systemMicrobial communityOperational taxonomic units |
| spellingShingle | Olubukola Oluranti Babalola Blessing Chidinma Nwachukwu Ayansina Segun Ayangbenro Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants Data in Brief 16S rRNA gene Illumina MiSeq system Microbial community Operational taxonomic units |
| title | Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| title_full | Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| title_fullStr | Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| title_full_unstemmed | Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| title_short | Amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| title_sort | amplicon sequencing data profiling of bacterial community connected with the rhizospheric soil from sunflower plants |
| topic | 16S rRNA gene Illumina MiSeq system Microbial community Operational taxonomic units |
| url | http://www.sciencedirect.com/science/article/pii/S2352340922004115 |
| work_keys_str_mv | AT olubukolaolurantibabalola ampliconsequencingdataprofilingofbacterialcommunityconnectedwiththerhizosphericsoilfromsunflowerplants AT blessingchidinmanwachukwu ampliconsequencingdataprofilingofbacterialcommunityconnectedwiththerhizosphericsoilfromsunflowerplants AT ayansinasegunayangbenro ampliconsequencingdataprofilingofbacterialcommunityconnectedwiththerhizosphericsoilfromsunflowerplants |