Metagenomic analysis reveals the microbiome and antibiotic resistance genes in indigenous Chinese yellow-feathered chickens

Metagenomic analysis reveals the microbiome and antibiotic resistance genes in indigenous Chinese yellow-feathered chickens

Yellow-feathered chickens have great nutritional value and are widely and traditionally used in China, on an industrial scale as broilers. The presence of intestinal microbes has been shown to correlate with poultry performance and serves as an essential reservoir of antibiotic resistance genes (ARG...

Full description

Bibliographic Details
Main Authors:	Yibin Xu, Yulin Huang, Lijin Guo, Siyu Zhang, Ruiquan Wu, Xiang Fang, Haiping Xu, Qinghua Nie
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2022-09-01
Series:	Frontiers in Microbiology
Subjects:	yellow-feathered broiler metagenomics microbiome antibiotic resistance gene binning
Online Access:	https://www.frontiersin.org/articles/10.3389/fmicb.2022.930289/full

Similar Items

Investigation of potential genetic factors for growth traits in yellow-feather broilers using weighted single-step genome-wide association study
by: Xiang Fang, et al.
Published: (2023-11-01)

Chicken Protein S Gene Regulates Adipogenesis and Affects Abdominal Fat Deposition
by: Lijin Guo, et al.
Published: (2022-08-01)

CircDCLRE1C Regulated Lipopolysaccharide-Induced Inflammatory Response and Apoptosis by Regulating miR-214b-3p/STAT3 Pathway in Macrophages
by: Yibin Xu, et al.
Published: (2022-06-01)

Bacterial Community and Spoilage Profiles Shift in Response to Packaging in Yellow-Feather Broiler, a Highly Popular Meat in Asia
by: Huhu Wang, et al.
Published: (2017-12-01)

Comparison of nonlinear models to describe the feather growth and development curve in yellow-feathered chickens
by: W.Y. Xie, et al.
Published: (2020-01-01)

Weighted single-step GWAS identified candidate genes associated with carcass traits in a Chinese yellow-feathered chicken population
by: Rongyang Pan, et al.
Published: (2024-02-01)

Comparison of gamithromycin residue depletion in yellow-feather and white-feather broilers after one single subcutaneous injection
by: Xing-Ping Li, et al.
Published: (2024-05-01)

Effects of different types of xanthophyll extracted from marigold on pigmentation of yellow-feathered chickens
by: Yu Wei, et al.
Published: (2023-12-01)

Effects of Lonicerae flos and Turmeric extracts on growth performance and intestinal health of yellow-feathered broilers
by: Yunru Ji, et al.
Published: (2024-04-01)

The digestive tract histology and geographical distribution of gastrointestinal microbiota in yellow-feather broilers
by: Pingting Guo, et al.
Published: (2023-10-01)

Cardiac transcriptome study of the effect of heat stress in yellow-feather broilers
by: Quan Zhang, et al.
Published: (2019-01-01)

Research Note: Dietary resveratrol supplementation improves the hepatic antioxidant capacity and attenuates lipopolysaccharide-induced inflammation in yellow-feathered broilers
by: Cui Zhu, et al.
Published: (2023-04-01)

Selection of housekeeping genes for quantitative gene expression analysis in yellow-feathered broilers
by: Jie Zhang, et al.
Published: (2018-04-01)

A probabilistic model to recover individual genomes from metagenomes
by: Johannes Dröge, et al.
Published: (2017-05-01)

Effect of dietary resveratrol supplementation on growth performance, antioxidant capacity, intestinal immunity and gut microbiota in yellow-feathered broilers challenged with lipopolysaccharide
by: Zhentao He, et al.
Published: (2022-08-01)

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
by: Gherman V. Uritskiy, et al.
Published: (2018-09-01)

Effects of challenge with Clostridium perfringens, Eimeria and both on ileal microbiota of yellow feather broilers
by: Xin Feng, et al.
Published: (2022-12-01)

The Effect of the Antimicrobial Peptide Plectasin on the Growth Performance, Intestinal Health, and Immune Function of Yellow-Feathered Chickens
by: Xinheng Zhang, et al.
Published: (2021-06-01)

Comparison of the Effects of Feeding Compound Probiotics and Antibiotics on Growth Performance, Gut Microbiota, and Small Intestine Morphology in Yellow-Feather Broilers
by: Yuyan Feng, et al.
Published: (2023-09-01)

Effect of Mixed Cooling on Postmortem Energy Metabolism and Meat Quality of Yellow-Feathered Broilers
by: ZHAO Yang, XU Xinglian, ZHAO Tinghui, WANG Peng, MEI Xincheng, LI Zhen
Published: (2024-02-01)

A missense mutation in ISPD contributes to maintain muscle fiber stability
by: Lijin Guo, et al.
Published: (2022-11-01)

Biases in genome reconstruction from metagenomic data
by: William C. Nelson, et al.
Published: (2020-10-01)

The Effects of Fermented Feed on the Growth Performance, Antioxidant Activity, Immune Function, Intestinal Digestive Enzyme Activity, Morphology, and Microflora of Yellow-Feather Chickens
by: Fei Xu, et al.
Published: (2023-11-01)

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
by: Dongwan D. Kang, et al.
Published: (2019-07-01)

Changes of Spoilage Bacteria on the Surface of Broiler Carcasses during the Efficient Slaughtering Process of Yellow Feather Chicken
by: Jinming SHI, et al.
Published: (2024-03-01)

Biophysical properties and volumetric changes in breast meat of broilers and yellow-feathered chicken as affected by cooking process
by: Waris Mehmood, et al.
Published: (2019-01-01)

Heat Stress Affects Jejunal Immunity of Yellow-Feathered Broilers and Is Potentially Mediated by the Microbiome
by: Wen-Chao Liu, et al.
Published: (2022-05-01)

Effects of Light Intensity on Growth, Anti-Stress Ability and Immune Function in Yellow Feathered Broilers
by: YL Guo, et al.

Optimal Level of Supplemental Manganese for Yellow-Feathered Broilers during the Growth Phase
by: Yibing Wang, et al.
Published: (2021-05-01)

Growth performances, gastrointestinal epithelium and bacteria responses of Yellow-feathered chickens to kudzu-leaf flavonoids supplement
by: Fuguang Xue, et al.
Published: (2021-09-01)

Improving metagenomic binning results with overlapped bins using assembly graphs
by: Vijini G. Mallawaarachchi, et al.
Published: (2021-05-01)

Morpho-Histology and Morphometry of Chicken Testes and Seminiferous Tubules among Yellow-Feathered Broilers of Different Ages
by: Jos Dorian Lawson Mfoundou, et al.
Published: (2022-09-01)

Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads
by: Sumaiya Nazeen, et al.
Published: (2020-02-01)

Effect of chilling methods on the surface color and water retention of yellow-feathered chickens
by: Hang Wang, et al.
Published: (2020-04-01)

Transcriptome-wide m6A methylation profiling of Wuhua yellow-feathered chicken ovary revealed regulatory pathways underlying sexual maturation and low egg-laying performance
by: Congjun Jia, et al.
Published: (2023-10-01)

Dietary Metabolizable Energy Responses in Yellow-Feathered Broiler Chickens from 29 to 56 d
by: HebatAllah Kasem El-Senousey, et al.
Published: (2019-12-01)

MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities
by: Ziye Wang, et al.
Published: (2023-01-01)

Unitig level assembly graph based metagenome-assembled genome refiner (UGMAGrefiner): A tool to increase completeness and resolution of metagenome-assembled genomes
by: Baoyu Xiang, et al.
Published: (2023-01-01)

Potential Effects of Acidifier and Amylase as Substitutes for Antibiotic on the Growth Performance, Nutrient Digestion and Gut Microbiota in Yellow-Feathered Broilers
by: Yibing Wang, et al.
Published: (2020-10-01)

Dietary supplementation with ellagic acid improves the growth performance, meat quality, and metabolomics profile of yellow-feathered broiler chickens
by: Fang Wang, et al.
Published: (2024-06-01)