Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing
Longan (Dimocarpus longan Lour.), as a kind of commercial fruit tree in the family Sapindaceae, is widely cultivated in South Asia. In this study, we obtained the complete chloroplast genome sequence of longan using Illumina paired-end sequencing. It has 160,833 bp in length, containing a pair of IR...
| Main Authors: | , , , , , , |
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| פורמט: | Article |
| שפה: | English |
| יצא לאור: |
Taylor & Francis Group
2017-12-01
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| סדרה: | Mitochondrial DNA. Part B. Resources |
| נושאים: | |
| גישה מקוונת: | http://dx.doi.org/10.1080/23802359.2017.1413310 |
| _version_ | 1827774279001833472 |
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| author | Kangyu Wang Li Li Mingzhu Zhao Shaokun Li Honghua Sun Yanxi Lv Yi Wang |
| author_facet | Kangyu Wang Li Li Mingzhu Zhao Shaokun Li Honghua Sun Yanxi Lv Yi Wang |
| author_sort | Kangyu Wang |
| collection | DOAJ |
| description | Longan (Dimocarpus longan Lour.), as a kind of commercial fruit tree in the family Sapindaceae, is widely cultivated in South Asia. In this study, we obtained the complete chloroplast genome sequence of longan using Illumina paired-end sequencing. It has 160,833 bp in length, containing a pair of IR regions (28,428 bp) separated by a small single-copy region (18,270 bp) and a large single-copy region (85,707 bp). The overall GC contents of the chloroplast genome were 37.8%. This circular genome contains 130 annotated genes, including 85 protein-coding genes, 37 tRNAs and 8 rRNAs. The phylogenetic analysis using maximum–likelihood (ML) and neighbour-joining (NJ) method showed that longan has the closest relationship with Litchi chinensis, Sapindus mukorossi and Dodonaea viscosa. This complete chloroplast genomes can be subsequently used for the genetic breeding of this valuable species. |
| first_indexed | 2024-03-11T13:36:17Z |
| format | Article |
| id | doaj.art-5742f8eb101d4908ac1bfca5da54f470 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:36:17Z |
| publishDate | 2017-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-5742f8eb101d4908ac1bfca5da54f4702023-11-02T15:42:59ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-12-012290490610.1080/23802359.2017.14133101413310Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencingKangyu Wang0Li Li1Mingzhu Zhao2Shaokun Li3Honghua Sun4Yanxi Lv5Yi Wang6Jilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityJilin Agricultural UniversityLongan (Dimocarpus longan Lour.), as a kind of commercial fruit tree in the family Sapindaceae, is widely cultivated in South Asia. In this study, we obtained the complete chloroplast genome sequence of longan using Illumina paired-end sequencing. It has 160,833 bp in length, containing a pair of IR regions (28,428 bp) separated by a small single-copy region (18,270 bp) and a large single-copy region (85,707 bp). The overall GC contents of the chloroplast genome were 37.8%. This circular genome contains 130 annotated genes, including 85 protein-coding genes, 37 tRNAs and 8 rRNAs. The phylogenetic analysis using maximum–likelihood (ML) and neighbour-joining (NJ) method showed that longan has the closest relationship with Litchi chinensis, Sapindus mukorossi and Dodonaea viscosa. This complete chloroplast genomes can be subsequently used for the genetic breeding of this valuable species.http://dx.doi.org/10.1080/23802359.2017.1413310dimocarpus longanchloroplast genomeillumina sequencingphylogenetic analysis |
| spellingShingle | Kangyu Wang Li Li Mingzhu Zhao Shaokun Li Honghua Sun Yanxi Lv Yi Wang Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing Mitochondrial DNA. Part B. Resources dimocarpus longan chloroplast genome illumina sequencing phylogenetic analysis |
| title | Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing |
| title_full | Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing |
| title_fullStr | Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing |
| title_full_unstemmed | Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing |
| title_short | Characterization of the complete chloroplast genome of longan (Dimocarpus longan Lour.) using illumina paired-end sequencing |
| title_sort | characterization of the complete chloroplast genome of longan dimocarpus longan lour using illumina paired end sequencing |
| topic | dimocarpus longan chloroplast genome illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2017.1413310 |
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